YRC Public Data Repository - Protein Structure Prediction

Protein:	LIPB_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LIPB_COXBU.

Description	E-value	Query Range	Subject Range
LIPB_PSEE4 - Octanoyltransferase OS=Pseudomonas entomophila (strain L48) GN=lipB PE=3 SV=1 gi\|95112748 - gi\|95112748\|emb\|CAK17476.1\| lipoyl(octanyl)-acyl carrier protein: protein transferase [Pseudomonas e...	245.0	[0..1]	[211..1]
LIPB_VIBVY - Octanoyltransferase OS=Vibrio vulnificus (strain YJ016) GN=lipB PE=3 SV=1	242.0	[0..2]	[217..3]
LIPB_VIBVU - Octanoyltransferase OS=Vibrio vulnificus GN=lipB PE=3 SV=1 LIPB_VIBVU - Octanoyltransferase OS=Vibrio vulnificus (strain CMCP6) GN=lipB PE=3 SV=1	240.0	[0..2]	[217..3]
LIPB_PSEPK - Octanoyltransferase OS=Pseudomonas putida (strain KT2440) GN=lipB PE=3 SV=1	239.0	[0..1]	[211..2]
LIPB_PSEP1 - Octanoyltransferase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lipB PE=3 SV=1 tr\|I7C8S7\|I7C8S7... - Octanoyltransferase OS=Pseudomonas putida (strain DOT-T1E) GN=lipB PE=3 SV=1 tr\|E4R6Y8\|E4R6Y8... - Octanoyltransferase OS=Pseudomonas putida (strain BIRD-1) GN=lipB PE=3 SV=1	239.0	[0..1]	[211..1]
LIPB_PSEU2 - Octanoyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lipB PE=3 SV=1	238.0	[0..3]	[211..4]
gi\|94491619, gi\|... - gi\|94491619\|ref\|ZP_01298830.1\| hypothetical protein CburD_01001415 [Coxiella burnetii Dugway 7E9-12]... LIPB_COXBN - Octanoyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=lipB PE=3 SV=1	238.0	[0..1]	[242..1]
LIPB_COXB2 - Octanoyltransferase OS=Coxiella burnetii (strain CbuG_Q212) GN=lipB PE=3 SV=1 LIPB_COXBR - Octanoyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=lipB PE=3 SV=1 gi\|165917356, gi... - gi\|165918959\|ref\|ZP_02219045.1\| lipoyltransferase [Coxiella burnetii RSA 334], gi\|165917356\|gb\|EDR35...	238.0	[0..1]	[242..1]
gi\|157644760 - gi\|157644760\|gb\|ABV59089.1\| lipoate-protein ligase B [Pseudomonas syringae pv. averrhoi] LIPB_PSE14 - Octanoyltransferase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=lipB PE=3 ...	236.0	[0..7]	[211..7]
LIPB_VIBPA - Octanoyltransferase OS=Vibrio parahaemolyticus GN=lipB PE=3 SV=1 LIPB_VIBPA - Octanoyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=lipB PE=3 SV=...	236.0	[0..1]	[213..1]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDVIIRQLA HLIPYQPLWE AMQTFTARRQ SQTTDEIWFL EHEPVFTQGL AGKPEHVLNS  60
   61 GNIPLIRTDR GGQVTYHGPG QLMMYLLLDL NRLGLSTRTF VRTIENTVAE SLQEWGIPAQ 120
  121 GKETAPGVYV DDKKICSIGL RVRKGFSYHG LALNVAMDLT PFSCINPCGF KGLTMTQIQD 180
  181 YVNPIEMDAV KRTIIPLFLK NFGYNQPAIM VETSLEFLID DHLRSFSEKL GERETVTNSR 240
  241 QN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	1w66A
Description:	Title withheld
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	3.33073922220594	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	3.33073922220594	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	3.33034630936933	bayes_pls_golite062009
ligase activity	3.05852492533937	bayes_pls_golite062009
catalytic activity	2.36416267096403	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: