YRC Public Data Repository - Protein Structure Prediction

Protein:	DAPA_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPA_COXBU.

Description	E-value	Query Range	Subject Range
DAPA_GEOUR - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter uraniireducens (strain Rf4) GN=dapA PE=3 SV=1	366.0	[0..1]	[287..1]
DAPA_BARBK - 4-hydroxy-tetrahydrodipicolinate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN...	365.0	[0..1]	[287..1]
DAPA_METJA - Dihydrodipicolinate synthase OS=Methanocaldococcus jannaschii GN=dapA PE=1 SV=1 DAPA_METJA - 4-hydroxy-tetrahydrodipicolinate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM ...	365.0	[0..1]	[287..1]
gi\|94491060 - gi\|94491060\|ref\|ZP_01298280.1\| hypothetical protein CburD_01001869 [Coxiella burnetii Dugway 7E9-12] gi\|95927042 - gi\|95927042\|ref\|ZP_01309809.1\| hypothetical protein CburR_01001196 [Coxiella burnetii RSA 331]	365.0	[0..1]	[289..4]
DAPA_GEOMG - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / ...	363.0	[0..1]	[287..1]
DAPA_GEOSL - Dihydrodipicolinate synthase OS=Geobacter sulfurreducens GN=dapA PE=3 SV=1 DAPA_GEOSL - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127...	361.0	[0..1]	[287..1]
gi\|91202476 - gi\|91202476\|emb\|CAJ72115.1\| strongly similar to dihydropicolinate synthase (DHDPS) [Candidatus Kuene...	360.0	[0..1]	[287..1]
gi\|241906440, gi... - gi\|241906440\|ref\|ZP_04791022.1\| dihydrodipicolinate synthase [Desulfovibrio vulgaris RCH1], gi\|24188... DAPA_DESVV - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=... DAPA_DESVH - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 295...	360.0	[0..2]	[287..3]
DAPA_CAUCR - Dihydrodipicolinate synthase OS=Caulobacter crescentus GN=dapA PE=3 SV=1 DAPA_CAUCR - 4-hydroxy-tetrahydrodipicolinate synthase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=da...	359.0	[0..2]	[288..6]
gi\|83647587, gi\|... - gi\|83647587\|ref\|YP_436022.1\| dihydrodipicolinate synthase [Hahella chejuensis KCTC 2396], gi\|8363563...	359.0	[0..1]	[287..1]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNGSLVALV TPMQENGEID YSNLKELVEW HLENDTDGLV ILGTTGESPT ITAEERHKII  60
   61 RQVVDQVNKK IPIIVGTGAN STVHTIEMTQ QAMELGADAA LIVTPYYNKP TQEGLFQYFK 120
  121 TIAEAVPIAQ ILYNVPSRTA CDLLPETVIR IAKCSNVVGL KEATGDIQRV KQLKAEDLDL 180
  181 LSGDDKTAMD FMLAGGKGVI SVVANVVPKP YHAFCITAVS GNVELAKKEN DQLSPLYDSL 240
  241 FVESNPIPVK WALSQMGVIP KGIRLPLTPL SERYHAKVRE SLQQVGIKC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	99.0
Match:	2ehhA
Description:	No description for 2ehhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits