YRC Public Data Repository - Protein Structure Prediction

Protein:	TRPA_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRPA_COXBU.

Description	E-value	Query Range	Subject Range
gi\|17133948, gi\|... - gi\|17232303\|ref\|NP_488851.1\| tryptophan synthase subunit alpha [Nostoc sp. PCC 7120], gi\|17133948\|db... gi\|25291896 - pir\|\|AC2407 tryptophan synthase alpha chain [imported] - Nostoc sp. (strain PCC 7120)	331.0	[0..1]	[261..1]
gi\|186469080, gi... - gi\|23124896\|ref\|ZP_00106854.1\| COG0159: Tryptophan synthase alpha chain [Nostoc punctiforme PCC 7310...	329.0	[0..1]	[261..1]
gi\|67925738, gi\|... - gi\|67925738\|ref\|ZP_00519045.1\| Tryptophan synthase, alpha chain [Crocosphaera watsonii WH 8501], gi\|...	325.0	[0..1]	[260..1]
TRPA_ANAVT - Tryptophan synthase alpha chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpA PE=3 S...	323.0	[0..1]	[261..1]
TRPA_PSEU2 - Tryptophan synthase alpha chain OS=Pseudomonas syringae pv. syringae (strain B728a) GN=trpA PE=3 SV=...	322.0	[0..1]	[257..1]
TRPA_TRIEI - Tryptophan synthase alpha chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpA PE=3 SV=1	320.0	[0..1]	[260..1]
TRPA_PSEA7 - Tryptophan synthase alpha chain OS=Pseudomonas aeruginosa (strain PA7) GN=trpA PE=3 SV=1	320.0	[0..1]	[257..1]
gi\|58651780 - gi\|58651780\|emb\|CAI50960.1\| tryptophan synthase, alpha subunit [uncultured bacterium]	320.0	[0..1]	[259..1]
TRPA_PSE14 - Tryptophan synthase alpha chain OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) G...	320.0	[0..1]	[257..1]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRIEQQFKK SPAYVAYLTA GDGGLERSLE SLLALAKGGV NILEVGVPFS DPVADGPVIQ  60
   61 EASIRALAQG TTLHDVLTLI TSFRQHSEIP IILFTYFNPL LAAGDKIYQQ MKSAGVDGCL 120
  121 VVDLPVEEAA PHLTACKTAK IAPILLISPS TTQERLKKIN EHGEGMLYYV CRPGTTGVRA 180
  181 TLPENFPAKM NQIKSMTSLP IVTGFGIANR KMAAQALQYA DGFVIGSLFV KAIAEGISKN 240
  241 ALTRLAQSLN PHYPNLRLIT PFRKKTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.045757
Match:	1a50A
Description:	Trp synthase alpha-subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits