YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541717, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541717, gi|....

Description	E-value	Query Range	Subject Range
gi\|21231814, gi\|... - gi\|21231814\|ref\|NP_637731.1\| preprotein translocase subunit YajC [Xanthomonas campestris pv. campest... gi\|167732951, gi... - gi\|188991191\|ref\|YP_001903201.1\| preprotein translocase subunit YajC [Xanthomonas campestris pv. cam... gi\|66768060, gi\|... - gi\|66768060\|ref\|YP_242822.1\| preprotein translocase subunit YajC [Xanthomonas campestris pv. campest...	146.0	[0..1]	[115..1]
gi\|94491904, gi\|... - gi\|94491904\|ref\|ZP_01299113.1\| hypothetical protein CburD_01000791 [Coxiella burnetii Dugway 7E9-12]... gi\|120576026, gi... - gi\|153208369\|ref\|ZP_01946707.1\| preprotein translocase, YajC subunit [Coxiella burnetii 'MSU Goat Q1... gi\|165919337, gi... - gi\|165919337\|ref\|ZP_02219423.1\| preprotein translocase, YajC subunit [Coxiella burnetii RSA 334], gi... gi\|212218579, gi... - gi\|212218579\|ref\|YP_002305366.1\| protein translocase subunit [Coxiella burnetii CbuK_Q154], gi\|21201...	138.0	[0..1]	[116..1]
gi\|11362569 - pir\|\|H82831 preprotein translocase YajC subunit XF0224 [imported] - Xylella fastidiosa (strain 9a5c) gi\|9105033, gi\|1... - gi\|9105033\|gb\|AAF83037.1\|AE003876_2 preprotein translocase YajC subunit [Xylella fastidiosa 9a5c], g...	136.0	[0..1]	[115..5]
gi\|86162707, gi\|... - gi\|87121909\|ref\|ZP_01077794.1\| hypothetical protein MED121_20496 [Marinomonas sp. MED121], gi\|861627...	136.0	[0..9]	[116..2]
gi\|182630849, gi... - gi\|182680739\|ref\|YP_001828899.1\| preprotein translocase, YajC subunit [Xylella fastidiosa M23], gi\|1... gi\|71729419, gi\|... - gi\|71900798\|ref\|ZP_00682917.1\| YajC [Xylella fastidiosa Ann-1], gi\|71729419\|gb\|EAO31531.1\| YajC [Xyl...	136.0	[0..1]	[115..5]
gi\|161762481, gi... - gi\|95926143\|ref\|ZP_01308964.1\| hypothetical protein CburR_01002029 [Coxiella burnetii RSA 331], gi\|1...	136.0	[0..1]	[116..1]
gi\|84367948, gi\|... - gi\|84624008\|ref\|YP_451380.1\| preprotein translocase subunit YajC [Xanthomonas oryzae pv. oryzae MAFF... gi\|58582106, gi\|... - gi\|58582106\|ref\|YP_201122.1\| preprotein translocase subunit YajC [Xanthomonas oryzae pv. oryzae KACC... gi\|188576287, gi... - gi\|188576287\|ref\|YP_001913216.1\| preprotein translocase subunit YajC [Xanthomonas oryzae pv. oryzae ...	135.0	[0..1]	[115..1]
gi\|59480676, gi\|... - gi\|59712575\|ref\|YP_205351.1\| preprotein translocase subunit YajC [Vibrio fischeri ES114], gi\|5948067...	135.0	[0..11]	[116..4]
gi\|71162835, gi\|... - gi\|71276373\|ref\|ZP_00652650.1\| YajC [Xylella fastidiosa Dixon], gi\|71162835\|gb\|EAO12560.1\| YajC [Xyl... gi\|71898644, gi\|... - gi\|71898644\|ref\|ZP_00680814.1\| YajC [Xylella fastidiosa Ann-1], gi\|71731591\|gb\|EAO33652.1\| YajC [Xyl... gi\|170729422, gi... - gi\|170729422\|ref\|YP_001774855.1\| preprotein translocase YajC subunit [Xylella fastidiosa M12], gi\|16...	134.0	[0..1]	[115..5]
gi\|28056171, gi\|... - gi\|28198111\|ref\|NP_778425.1\| preprotein translocase subunit YajC [Xylella fastidiosa Temecula1], gi\|...	134.0	[0..4]	[115..1]

Back

Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLSVLGVG VVYAAPVTAQ APHPGGFWSM LWLPLLLILV FYFLLIRPQS KRAKEHRQLL  60
   61 EGISLGDEVV TTGGVVARVS RLKDNFVVLE ISKGTEITVQ KASIASVLPK GTIDSI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.920819
Match:	PF02699.6
Description:	No description for PF02699.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.757	N/A	N/A	b.38.1	Sm-like ribonucleoproteins
View	Download	0.689	N/A	N/A	b.38.1	Sm-like ribonucleoproteins
View	Download	0.630	N/A	N/A	b.38.1	Sm-like ribonucleoproteins
View	Download	0.614	N/A	N/A	b.38.1	Sm-like ribonucleoproteins
View	Download	0.578	N/A	N/A	b.38.1	Sm-like ribonucleoproteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits