YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654445, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654445, gi|....

Description	E-value	Query Range	Subject Range
gi\|161831440, gi... - gi\|95926328\|ref\|ZP_01309124.1\| hypothetical protein CburR_01001862 [Coxiella burnetii RSA 331], gi\|1...	239.0	[0..4]	[248..1]
gi\|154707654, gi... - gi\|94491908\|ref\|ZP_01299117.1\| hypothetical protein CburD_01000795 [Coxiella burnetii Dugway 7E9-12]... gi\|165916959, gi... - gi\|165919360\|ref\|ZP_02219446.1\| enhanced entry protein EnhA [Coxiella burnetii RSA 334], gi\|16591695...	231.0	[0..4]	[243..1]
gi\|110805975, gi... - gi\|110805975\|ref\|YP_689495.1\| hypothetical protein SFV_2062 [Shigella flexneri 5 str. 8401], gi\|1106...	192.0	[0..3]	[247..1]
gi\|30041695, gi\|... - gi\|30063442\|ref\|NP_837613.1\| hypothetical protein S2168 [Shigella flexneri 2a str. 2457T], gi\|300416... gi\|24052400, gi\|... - gi\|24113382\|ref\|NP_707892.1\| hypothetical protein SF2058 [Shigella flexneri 2a str. 301], gi\|2405240...	190.0	[0..3]	[247..1]
gi\|117624178, gi... - gi\|117624178\|ref\|YP_853091.1\| hypothetical protein APECO1_6023 [Escherichia coli APEC O1], gi\|115513...	190.0	[0..3]	[247..1]
gi\|92110337 - gi\|92110337\|emb\|CAJ87605.1\| putative exported protein ErfK [Escherichia coli]	190.0	[0..3]	[247..1]
EG12682 - L,D-transpeptidase linking Lpp to murein / L,D-transpeptidase linking Lpp to murein, periplasmic gi\|89108811, gi\|... - gi\|89108811\|ref\|AP_002591.1\| conserved hypothetical protein with NAD(P)-binding Rossmann-fold domain... EG12682 - L,D-transpeptidase linking Lpp to murein / L,D-transpeptidase linking Lpp to murein, periplasmic ERFK_ECOLI - Protein erfK/srfK precursor - Escherichia coli gi\|238860592, gi... - gi\|238901184\|ref\|YP_002926980.1\| hypothetical protein BWG_1784 [Escherichia coli BW2952], gi\|2388605... gi\|254161987, gi... - gi\|254161987\|ref\|YP_003045095.1\| conserved hypothetical protein with NAD(P)-binding Rossmann-fold do... gi\|251785373, gi... - gi\|251785373\|ref\|YP_002999677.1\| hypothetical protein B21_01888 [Escherichia coli BL21], gi\|24237764... gi\|254288775, gi... - gi\|254288775\|ref\|YP_003054523.1\| conserved protein with NAD(P)-binding Rossmann-fold domain [Escheri... gi\|218427612, gi... - gi\|218690048\|ref\|YP_002398260.1\| hypothetical protein ECED1_2326 [Escherichia coli ED1a], gi\|2184276... gi\|169889457, gi... - gi\|170081622\|ref\|YP_001730942.1\| hypothetical protein ECDH10B_2134 [Escherichia coli str. K-12 subst...	189.0	[0..4]	[247..1]
gi\|75196052 - gi\|75196052\|ref\|ZP_00706122.1\| COG1376: Uncharacterized protein conserved in bacteria [Escherichia c...	189.0	[0..3]	[247..1]
gi\|26108732, gi\|... - gi\|26248328\|ref\|NP_754368.1\| hypothetical protein c2476 [Escherichia coli CFT073], gi\|26108732\|gb\|AA... gi\|226900772, gi... - gi\|237704406\|ref\|ZP_04534887.1\| erfK/srfK [Escherichia sp. 3_2_53FAA], gi\|226900772\|gb\|EEH87031.1\| e... gi\|75242804 - gi\|75242804\|ref\|ZP_00726510.1\| COG1376: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|110343750, gi... - gi\|110642158\|ref\|YP_669888.1\| hypothetical protein ECP_1988 [Escherichia coli 536], gi\|110343750\|gb\|... gi\|91211241, gi\|... - gi\|91211241\|ref\|YP_541227.1\| hypothetical protein UTI89_C2228 [Escherichia coli UTI89], gi\|91072815\|... gi\|227885541, gi... - gi\|227885541\|ref\|ZP_04003346.1\| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 83972], gi\|2278...	189.0	[0..3]	[247..1]
gi\|75186790 - gi\|75186790\|ref\|ZP_00700057.1\| COG1376: Uncharacterized protein conserved in bacteria [Escherichia c...	189.0	[0..3]	[247..1]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAMERAIFI VLVSLLGASI AFGADSPNEY YGTGLCGKSG FECIKVQRGQ SWQNLFPDEN  60
   61 QRDLVQRLNR TDTYLYPGKT LAVPKDLKDA TIYSISPFPL RIKKLGEKLI MVNQDQLAWG 120
  121 AYDPEGQLIK WGPISSGKNY CRDVNRSCET ITGIFYVFHK KGPGCKSNVF PVETSGGAVM 180
  181 PYCMFFFKGY ALHGSNEVTG YRDSHGCVRL FKRDAKWLNE NFVNVATKDG HLGTKVVVEK 240
  241 LTMENSGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1y7mA
Description:	Crystal Structure of the B. subtilis YkuD protein at 2 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0233690850112888	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: