YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541705, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541705, gi|....

Description	E-value	Query Range	Subject Range
gi\|161831388, gi... - gi\|95926555\|ref\|ZP_01309337.1\| hypothetical protein CburR_01001628 [Coxiella burnetii RSA 331], gi\|1... gi\|165916949, gi... - gi\|165919350\|ref\|ZP_02219436.1\| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA 3... gi\|212212468, gi... - gi\|212212468\|ref\|YP_002303404.1\| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212], gi\|21201... gi\|212218566, gi... - gi\|212218566\|ref\|YP_002305353.1\| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154], gi\|21201... gi\|153208365, gi... - gi\|153208365\|ref\|ZP_01946703.1\| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU ...	232.0	[0..1]	[240..1]
gi\|68346591, gi\|... - gi\|70732292\|ref\|YP_262048.1\| RNA methyltransferase [Pseudomonas fluorescens Pf-5], gi\|68346591\|gb\|AA...	231.0	[0..1]	[239..1]
gi\|95109213, gi\|... - gi\|95109213\|emb\|CAK13910.1\| putative tRNA/rRNA methyltransferase, TrmH family, group 1 [Pseudomonas ... gi\|95109213 - gi\|95109213\|emb\|CAK13910.1\| putative tRNA/rRNA methyltransferase, TrmH family, group 1 [Pseudomonas ...	231.0	[0..1]	[239..1]
gi\|94491913, gi\|... - gi\|94491913\|ref\|ZP_01299122.1\| hypothetical protein CburD_01000800 [Coxiella burnetii Dugway 7E9-12]...	230.0	[0..1]	[240..1]
gi\|218889899, gi... - gi\|218889899\|ref\|YP_002438763.1\| putative methyltransferase [Pseudomonas aeruginosa LESB58], gi\|2187... gi\|194553493, gi... - gi\|254242508\|ref\|ZP_04935830.1\| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192], gi\|19... gi\|116051842, gi... - gi\|116051842\|ref\|YP_789315.1\| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14], gi\|115...	229.0	[0..1]	[239..1]
gi\|78369010, gi\|... - gi\|78369010\|ref\|ZP_00839189.1\| RNA methyltransferase TrmH, group 1 [Shewanella sp. PV-4], gi\|7835897...	228.0	[0..1]	[238..17]
gi\|26987575, gi\|... - gi\|26987575\|ref\|NP_743000.1\| RNA methyltransferase [Pseudomonas putida KT2440], gi\|24982250\|gb\|AAN66...	228.0	[0..1]	[239..1]
gi\|82714507, gi\|... - gi\|82738427\|ref\|ZP_00901260.1\| RNA methyltransferase TrmH, group 1 [Pseudomonas putida F1], gi\|82714... tr\|I7C0S9\|I7C0S9... - RNA methyltransferase OS=Pseudomonas putida (strain DOT-T1E) GN=yfhQ PE=4 SV=1	228.0	[0..1]	[239..29]
gi\|15599012, gi\|... - gi\|9949991\|gb\|AAG07204.1\|AE004799_10 probable methyltransferase [Pseudomonas aeruginosa PAO1], gi\|15... gi\|11351452 - pir\|\|B83169 probable methyltransferase PA3817 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|126168652, gi... - gi\|254236721\|ref\|ZP_04930044.1\| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719], gi\|1...	228.0	[0..1]	[239..1]
gi\|3046324, gi\|1... - gi\|3046324\|gb\|AAC24483.1\| unknown [Azotobacter vinelandii], pir\|\|T44278 conserved hypothetical prote...	227.0	[0..1]	[239..1]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQNVRIVLV NPSHPGNIGA AARAMKTMGF SRLYLVKPEL FPHEQATARA AGADAVLASA  60
   61 RVVDDLTAAL EGCNLVFGTS ARSRTLPWPL KTPRECAEQS VQHQGNIAIV FGRERSGLTN 120
  121 EELAQCQYHV TIPTEAAFSS LNLAQAVQIL TYEIRMAKLN AVDPRHQNTP IQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1v2xA
Description:	TrmH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA methyltransferase activity	4.77771076540343	bayes_pls_golite062009
methyltransferase activity	4.0901595540349	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01958090893547	bayes_pls_golite062009
rRNA methyltransferase activity	3.659149846946	bayes_pls_golite062009
tRNA methyltransferase activity	3.35439517507384	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	3.10060782124076	bayes_pls_golite062009
tRNA (guanine-N1-)-methyltransferase activity	2.87460031907348	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.59156540645412	bayes_pls_golite062009
transferase activity	1.84002196534744	bayes_pls_golite062009
catalytic activity	1.16774040077235	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	0.47764353619615	bayes_pls_golite062009
N-methyltransferase activity	0.0655574594365502	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [173-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLATADQMEG FYVHLEKTLV DIKFIDPKQP KMLMKRLRRL FNRAQIDETE LNILRGILAS  60
   61 IHRRDDCC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: