YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541620, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541620, gi|....

Description	E-value	Query Range	Subject Range
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	199.0	[0..3]	[212..6]
gi\|51855517, gi\|... - gi\|51891828\|ref\|YP_074519.1\| two-component response regulator [Symbiobacterium thermophilum IAM 1486...	198.0	[0..3]	[210..5]
gi\|28209958, gi\|... - gi\|28209958\|ref\|NP_780902.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820239...	197.0	[0..3]	[211..25]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	197.0	[0..3]	[213..4]
gi\|207090866 - gi\|207090866\|gb\|EDZ68137.1\| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus... gi\|224411212, gi... - gi\|254434533\|ref\|ZP_05048041.1\| phosphate regulon transcriptional regulatory protein PhoB [Nitrosoco... gi\|76884178, gi\|... - gi\|77165864\|ref\|YP_344389.1\| phosphate regulon transcriptional regulatory protein phoB [Nitrosococcu...	197.0	[0..3]	[214..4]
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	197.0	[0..2]	[211..105]
gi\|134051275, gi... - gi\|88945490\|ref\|ZP_01148660.1\| Response regulator receiver [Desulfotomaculum reducens MI-1], gi\|8892...	197.0	[0..1]	[212..1]
gi\|109646584, gi... - gi\|68207819\|ref\|ZP_00559966.1\| Response regulator receiver:Transcriptional regulatory protein, C ter... gi\|89333300, gi\|... - gi\|89893852\|ref\|YP_517339.1\| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51], gi\|893...	196.0	[0..3]	[213..7]
gi\|82502198 - gi\|82502198\|gb\|ABB80126.1\| SubR [Bacillus subtilis]	195.0	[0..2]	[213..4]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITVLLIEDH LLIRQAMRLM LEEIQGVRIV GEAGTGEEGL KLRRDKEPDV IILDFQLPDT  60
   61 NGLELSRKLL RRDATIKILM VTGMEGDLLP MRLLEVGVRG FITKSSDTTE LEQAIRAVYK 120
  121 GQRYISSAIA NRLALSKTTT AATCPFKKLS DREMEVLLLL AKGKKAEAIA KQLHITGKTV 180
  181 NSHRYRIFEK LGVKNDVELI KLAVQYGLVE IDKT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.221849
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits