YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541587, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541587, gi|....

Description	E-value	Query Range	Subject Range
gi\|19914821, gi\|... - gi\|20089870\|ref\|NP_615945.1\| chloride peroxidase [Methanosarcina acetivorans C2A], gi\|19914821\|gb\|AA...	159.0	[0..4]	[232..21]
gi\|73539032, gi\|... - gi\|73539032\|ref\|YP_299399.1\| Alpha/beta hydrolase fold [Ralstonia eutropha JMP134], gi\|72122369\|gb\|A...	158.0	[0..4]	[232..21]
gi\|25515813, gi\|... - pir\|\|AE1655 prolyl aminopetidases homolog lin1782 [imported] - Listeria innocua (strain Clip11262), ... gi\|16800850 - gi\|16800850\|ref\|NP_471118.1\| hypothetical protein lin1782 [Listeria innocua Clip11262]	158.0	[0..3]	[232..18]
gi\|78066438, gi\|... - gi\|78066438\|ref\|YP_369207.1\| Alpha/beta hydrolase [Burkholderia sp. 383], gi\|77967183\|gb\|ABB08563.1\|...	156.0	[0..4]	[232..21]
gi\|68529012, gi\|... - gi\|94314231\|ref\|YP_587440.1\| alpha/beta hydrolase fold [Ralstonia metallidurans CH34], gi\|93358083\|g...	155.0	[0..4]	[232..21]
tr\|Q87XT7\|Q87XT7... - Hydrolase, alpha/beta fold family OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4089 P... gi\|213971418, gi... - gi\|213971418\|ref\|ZP_03399532.1\| hydrolase, alpha/beta fold family [Pseudomonas syringae pv. tomato T... gi\|28871231, gi\|... - gi\|28871231\|ref\|NP_793850.1\| alpha/beta fold family hydrolase [Pseudomonas syringae pv. tomato str. ...	155.0	[0..4]	[231..20]
gi\|118710467, gi... - gi\|170737439\|ref\|YP_001778699.1\| alpha/beta hydrolase fold [Burkholderia cenocepacia MC0-3], gi\|1698... gi\|107025528, gi... - gi\|67655162\|ref\|ZP_00452549.1\| Alpha/beta hydrolase fold [Burkholderia cenocepacia AU 1054], gi\|6709... gi\|116651291, gi... - gi\|67663049\|ref\|ZP_00460334.1\| Alpha/beta hydrolase fold [Burkholderia cenocepacia HI2424], gi\|67103...	154.0	[0..5]	[233..22]
gi\|67154960 - gi\|67154960\|ref\|ZP_00416705.1\| Alpha/beta hydrolase fold [Azotobacter vinelandii AvOP] gi\|67089093, gi\|... - gi\|67154960\|ref\|ZP_00416705.1\| Alpha/beta hydrolase fold [Azotobacter vinelandii AvOP], gi\|67089093\|...	154.0	[0..4]	[234..137]
gi\|87285327, gi\|... - gi\|87311965\|ref\|ZP_01094075.1\| Alpha/beta hydrolase fold protein [Blastopirellula marina DSM 3645], ...	154.0	[0..4]	[232..22]
gi\|94970771, gi\|... - gi\|94970771\|ref\|YP_592819.1\| Alpha/beta hydrolase [Candidatus Koribacter versatilis Ellin345], gi\|94...	154.0	[0..4]	[233..21]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSEPIVFIS GWGFHASLLK ENPYLEKKII LIDLPRLSEL TLESVVNYLL PQIPDKSIIL  60
   61 GWSLGGLIGI QLASQFPGKV KKLALISSSP RLAADANWPG INKKDVERFL ILAKKDFNNL 120
  121 FDYFLSLVNY PNKDLAFKNQ LIKNAVDFER DKNCLRNYLS ILFETDLREE YSCLKIPLFH 180
  181 LFGEKDAIYK VDSKALAGLN KHSEIHSLPK AGHLPFLTHA REFYDRLMRF VNDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1m33A
Description:	Biotin biosynthesis protein BioH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.76673721118052	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.0940814269146387	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: