YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654318, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654318, gi|....

Description	E-value	Query Range	Subject Range
gi\|196251628, gi... - gi\|196251628\|ref\|ZP_03150296.1\| Cobyrinic acid ac-diamide synthase [Clostridium thermocellum DSM 415... gi\|125974862, gi... - gi\|67874869\|ref\|ZP_00504449.1\| ATPase, ParA type [Clostridium thermocellum ATCC 27405], gi\|67850972\|...	150.0	[0..3]	[221..5]
gi\|227518145, gi... - gi\|227518145\|ref\|ZP_03948194.1\| chromosome partitioning ATPase [Enterococcus faecalis TX0104], gi\|22... gi\|29345208, gi\|... - gi\|29377740\|ref\|NP_816894.1\| ParaA family ATPase [Enterococcus faecalis V583], gi\|29345208\|gb\|AAO829... gi\|238830948, gi... - gi\|238856387\|ref\|ZP_04646656.1\| sporulation initiation inhibitor protein soj [Enterococcus faecalis ... gi\|229304168, gi... - gi\|229550735\|ref\|ZP_04439460.1\| chromosome partitioning ATPase [Enterococcus faecalis ATCC 29200], g... gi\|229307747, gi... - gi\|229547165\|ref\|ZP_04435890.1\| chromosome partitioning ATPase [Enterococcus faecalis TX1332], gi\|22... gi\|227175226, gi... - gi\|227555649\|ref\|ZP_03985696.1\| chromosome partitioning ATPase [Enterococcus faecalis HH22], gi\|2271...	150.0	[0..2]	[218..4]
gi\|68194822, gi\|... - gi\|69247497\|ref\|ZP_00604367.1\| Cobyrinic acid a,c-diamide synthase [Enterococcus faecium DO], gi\|681... gi\|48824601 - ref\|ZP_00285954.1\| COG1192: ATPases involved in chromosome partitioning [Enterococcus faecium]	150.0	[0..2]	[218..4]
COBQ_NOSS1 - Cobyric acid synthase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=cobQ PE=3 SV=1 gi\|25327096 - pir\|\|AB2103 cobyric acid synthase [imported] - Nostoc sp. (strain PCC 7120)	150.0	[0..1]	[242..3]
gi\|146297750, gi... - gi\|82500912\|ref\|ZP_00886301.1\| ATPases involved in chromosome partitioning [Caldicellulosiruptor sac...	149.0	[0..3]	[239..5]
COBQ_ANAVT - Cobyric acid synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=cobQ PE=3 SV=1	148.0	[0..1]	[242..1]
COBQ_METJA - Probable cobyric acid synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-... COBQ_METJA - Probable cobyric acid synthase OS=Methanocaldococcus jannaschii GN=cobQ PE=3 SV=2	148.0	[0..3]	[237..5]
gi\|2127822 - gi\|2127822\|pir\|\|D64360 cobyric acid synthase homolog - Methanococcus jannaschii gi\|15668661, gi\|... - gi\|1591187\|gb\|AAB98475.1\| cobyric acid synthase (cbiP) [Methanocaldococcus jannaschii DSM 2661], gi\|...	148.0	[0..1]	[237..2]
gi\|7450298 - gi\|7450298\|pir\|\|S76673 hypothetical protein - Synechocystis sp. (strain PCC 6803) gi\|1001778, gi\|1... - gi\|16331819\|ref\|NP_442547.1\| cobyric acid synthase [Synechocystis sp. PCC 6803], gi\|1001778\|dbj\|BAA1...	147.0	[0..1]	[238..30]
gi\|221321318 - gi\|221321318\|ref\|ZP_03602612.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... gi\|221325601 - gi\|221325601\|ref\|ZP_03606895.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... SOJ_BACSU - Sporulation initiation inhibitor protein soj OS=Bacillus subtilis GN=soj PE=1 SV=1 gi\|221316405 - gi\|221316405\|ref\|ZP_03598210.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... SOJ_BACSU - Sporulation initiation inhibitor protein Soj OS=Bacillus subtilis (strain 168) GN=soj PE=1 SV=1	146.0	[0..2]	[240..4]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFFITGTDT GVGKTYVSTL LLHQFNNKGF STFGIKPIAS GCRKINNKLH NDDALALQKV  60
   61 ASIKTTYEHV NPIALEPPIA PHIAAKLNNQ VLSKNDLAKT INQIFNLPAD VFIVEGAGGW 120
  121 FVPLNEKEFL SDLVKLLKIP VVLVIGIKLG CLNHAFLTAK AMLREKIPLV GWVANCIEPD 180
  181 VLAMAENIQT LKKGIKAPCL GVIPYDGTVE DLSIQPLLDH FNKVVSPEEN IRSEPSESWT 240
  241 VK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1a82A
Description:	DETHIOBIOTIN SYNTHETASE FROM ESCHERICHIA COLI, COMPLEX WITH SUBSTRATES ATP AND DIAMINOPELARGONIC ACID
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: