YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541513, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541513, gi|....

Description	E-value	Query Range	Subject Range
3HIDH_DICDI - Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 ... gi\|66801237, gi\|... - gi\|66801237\|ref\|XP_629544.1\| 3-hydroxyisobutyrate dehydrogenase [Dictyostelium discoideum AX4], gi\|6...	219.0	[0..3]	[294..24]
gi\|56419562, gi\|... - gi\|56419562\|ref\|YP_146880.1\| 3-hydroxyisobutyrate dehydrogenase [Geobacillus kaustophilus HTA426], g...	215.0	[0..1]	[292..1]
gi\|110750101 - gi\|110750101\|ref\|XP_623606.2\| PREDICTED: similar to 3-hydroxyisobutyrate dehydrogenase, mitochondria...	213.0	[0..2]	[294..19]
gi\|26347027 - gi\|26347027\|dbj\|BAC37162.1\| unnamed protein product [Mus musculus]	213.0	[0..4]	[296..41]
gi\|56459975, gi\|... - gi\|56459975\|ref\|YP_155256.1\| 3-hydroxyisobutyrate dehydrogenase [Idiomarina loihiensis L2TR], gi\|561...	211.0	[0..1]	[297..1]
gi\|47125249, gi\|... - gi\|47125249\|gb\|AAH70849.1\| MGC84587 protein [Xenopus laevis], gi\|147898679\|ref\|NP_001084759.1\| hypot...	211.0	[0..4]	[296..35]
gi\|52790434 - gi\|52790434\|gb\|AAH20167.1\| Unknown (protein for IMAGE:3529287) [Homo sapiens]	210.0	[0..4]	[296..66]
gi\|94482754 - gi\|94482754\|gb\|ABF22374.1\| 3-hydroxyisobutyrate dehydrogenase [Takifugu rubripes]	209.0	[0..4]	[296..35]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTIGFIGLG HMGQPMVNNL IKNNCLVKVY DVIDEAVEKA VKTGATAAAS PAEVAEEADV  60
   61 VFTMLQTSDQ VRNCCLSAKG IFATINRQAI YIDSSSIDIE GSRELHKEAK KRGISMLDAP 120
  121 VSGGVAAAEA AGLTFMVGGE KEDFERAKRV LGILGKKIIY AGSDGAGAAA KICNNMLLGI 180
  181 SMIAVSEAFV LADKLGLDPQ KLFEISSNAS GECWSLTHYC PWPGILKDVP SSHEYKPGFT 240
  241 AKMMLKDLNL SQAAASDAKA NTPLGKRATE LYQQFVDSDH GEVDFSAIIN LLKDKSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.221849
Match:	2i9pA
Description:	No description for 2i9pA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits