YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654219, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654219, gi|....

Description	E-value	Query Range	Subject Range
gi\|69140838, gi\|... - gi\|92117815\|ref\|YP_577544.1\| colicin V production protein [Nitrobacter hamburgensis X14], gi\|9180070...	149.0	[0..8]	[178..29]
gi\|78386553, gi\|... - gi\|90423786\|ref\|YP_532156.1\| colicin V production protein [Rhodopseudomonas palustris BisB18], gi\|90...	147.0	[0..8]	[184..2]
gi\|66769585, gi\|... - gi\|66769585\|ref\|YP_244347.1\| colicin V production protein [Xanthomonas campestris pv. campestris str... gi\|21230421, gi\|... - gi\|21230421\|ref\|NP_636338.1\| colicin V production protein [Xanthomonas campestris pv. campestris str...	145.0	[0..11]	[181..1]
gi\|192291871, gi... - gi\|192291871\|ref\|YP_001992476.1\| Colicin V production protein [Rhodopseudomonas palustris TIE-1], gi... RPA3090 - RPA3090 putative colicin V production protein 3495947:3496582 forward MW:23138	144.0	[0..8]	[180..2]
gi\|91683920, gi\|... - gi\|91977464\|ref\|YP_570123.1\| colicin V production protein [Rhodopseudomonas palustris BisB5], gi\|916...	144.0	[0..8]	[183..2]
gi\|77698728, gi\|... - gi\|77741510\|ref\|ZP_00809993.1\| Colicin V production protein [Rhodopseudomonas palustris BisA53], gi\|...	144.0	[0..8]	[178..2]
gi\|21241796, gi\|... - gi\|21241796\|ref\|NP_641378.1\| colicin V production protein [Xanthomonas axonopodis pv. citri str. 306...	143.0	[0..11]	[181..1]
gi\|78046616, gi\|... - gi\|78046616\|ref\|YP_362791.1\| colicin V production protein [Xanthomonas campestris pv. vesicatoria st...	143.0	[0..11]	[181..1]
gi\|85716396, gi\|... - gi\|85716396\|ref\|ZP_01047368.1\| Colicin V production protein [Nitrobacter sp. Nb-311A], gi\|85696753\|g...	142.0	[0..8]	[178..2]
gi\|75676206, gi\|... - gi\|75676206\|ref\|YP_318627.1\| colicin V production protein [Nitrobacter winogradskyi Nb-255], gi\|7442...	142.0	[0..8]	[183..2]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSHLLSHLN WVDFAIIGII LFSIIISFFR GFVREAVSLV VWVAAIIVAI KFVEPVQIYL  60
   61 QTWIVSSSIR YAVAFISLFL SVFIIGIILN MLIHVLLKKT GLSITDRLLG IFFGAGRGFL 120
  121 IVAVLLLFVS IGSVEDGSLI AQSQLAPKFQ PIVSWLNQFL PSQFKQFSHW LADQPVSKVN 180
  181 NGDR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	30.638272
Match:	PF02674.7
Description:	No description for PF02674.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits