YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654109, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654109, gi|....

Description	E-value	Query Range	Subject Range
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	192.0	[0..2]	[212..105]
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	187.0	[0..3]	[211..6]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	187.0	[0..3]	[212..4]
PHOP_BACSU - Alkaline phosphatase synthesis transcriptional regulatory protein phoP OS=Bacillus subtilis GN=phoP ... PHOP_BACSU - Alkaline phosphatase synthesis transcriptional regulatory protein PhoP OS=Bacillus subtilis (strain ... gi\|221324377 - gi\|221324377\|ref\|ZP_03605671.1\| two-component response regulator [Bacillus subtilis subsp. subtilis ... gi\|221320095 - gi\|221320095\|ref\|ZP_03601389.1\| two-component response regulator [Bacillus subtilis subsp. subtilis ... gi\|221315178 - gi\|221315178\|ref\|ZP_03596983.1\| two-component response regulator [Bacillus subtilis subsp. subtilis ...	187.0	[0..2]	[212..3]
PHOP_BACSU - Alkaline phosphatase synthesis transcriptional regulatory protein phoP OS=Bacillus subtilis GN=phoP ... gi\|2635376, gi\|1... - gi\|2635376\|emb\|CAB14871.1\| two-component response regulator [Bacillus subtilis subsp. subtilis str. ...	187.0	[0..2]	[212..3]
gi\|77996843, gi\|... - gi\|78044728\|ref\|YP_360866.1\| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-290...	186.0	[0..2]	[212..1]
gi\|4982229, gi\|1... - gi\|4982229\|gb\|AAD36722.1\|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8], gi\|15644403... gi\|7444020 - pir\|\|D72228 response regulator DrrA - Thermotoga maritima (strain MSB8)	186.0	[0..2]	[213..12]
gi\|89897369, gi\|... - gi\|89897369\|ref\|YP_520856.1\| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51], gi\|893...	186.0	[0..2]	[210..1]
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	186.0	[0..3]	[209..5]
gi\|134051275, gi... - gi\|88945490\|ref\|ZP_01148660.1\| Response regulator receiver [Desulfotomaculum reducens MI-1], gi\|8892...	186.0	[0..1]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINVLLIEDH VLIRRGMRLM LEQVKGIRIV GEASTGEEGL ALRREKEPDV VMLDFQLPDT  60
   61 NGLELARKLL RRDPEIKILV VTAMEGELLP MRLLDVGVRG FITKSSDSGE LERAIRAVHS 120
  121 GQRYISSAIA SRLALSKTTP TKSPFDQLSH RQMEVLLLLA KGMKAEEIAK QLHITAKTVN 180
  181 SHRYRMFDKL GVKNDVELIK LAVQYGVIDI DKTDIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.39794
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits