YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654099, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654099, gi|....

Description	E-value	Query Range	Subject Range
GUAA_SALRD - GMP synthase [glutamine-hydrolyzing] OS=Salinibacter ruber (strain DSM 13855 / M31) GN=guaA PE=3 SV=...	194.0	[0..2]	[218..4]
GUAA_BACLD - GMP synthase [glutamine-hydrolyzing] OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 250...	189.0	[0..3]	[218..9]
GUAA_LISIN - GMP synthase [glutamine-hydrolyzing] OS=Listeria innocua GN=guaA PE=3 SV=1 GUAA_LISIN - GMP synthase [glutamine-hydrolyzing] OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=guaA PE=3...	189.0	[0..2]	[218..13]
gi\|88935980, gi\|... - gi\|88935980\|ref\|ZP_01141601.1\| GMP synthase, C-terminal:GMP synthase, N-terminal [Geobacter uraniumr...	189.0	[0..2]	[218..9]
gi\|87289437, gi\|... - gi\|87307823\|ref\|ZP_01089966.1\| GMP synthase [Blastopirellula marina DSM 3645], gi\|87289437\|gb\|EAQ813...	189.0	[0..2]	[218..21]
GUAA_CLOTH - GMP synthase [glutamine-hydrolyzing] OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBR...	189.0	[0..3]	[218..6]
gi\|238834567, gi... - gi\|238852873\|ref\|ZP_04643278.1\| GMP synthase [Lactobacillus gasseri 202-4], gi\|238834567\|gb\|EEQ26799... GUAA_LACGA - GMP synthase [glutamine-hydrolyzing] OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / JCM 1... gi\|23003310 - gi\|23003310\|ref\|ZP_00046975.1\| COG0519: GMP synthase, PP-ATPase domain/subunit [Lactobacillus gasser... gi\|226820045 - gi\|226820045\|ref\|ZP_03809164.1\| GMP synthase [Lactobacillus gasseri MV-22]	187.0	[0..2]	[218..11]
gi\|221089178, gi... - gi\|221089178\|ref\|ZP_03558700.1\| GMP synthase, large subunit [Geobacillus sp. Y412MC61], gi\|220706876... GUAA_GEOKA - GMP synthase [glutamine-hydrolyzing] OS=Geobacillus kaustophilus GN=guaA PE=3 SV=1 gi\|229328416, gi... - gi\|229500698\|ref\|ZP_04394346.1\| GMP synthase, large subunit [Geobacillus sp. Y412MC52], gi\|229328416... GUAA_GEOKA - GMP synthase [glutamine-hydrolyzing] OS=Geobacillus kaustophilus (strain HTA426) GN=guaA PE=3 SV=1	187.0	[0..3]	[218..6]
gi\|228937552, gi... - gi\|228937552\|ref\|ZP_04100193.1\| GMP synthase, large subunit [Bacillus thuringiensis serovar berliner... gi\|228860640, gi... - gi\|228898997\|ref\|ZP_04063272.1\| GMP synthase, large subunit [Bacillus thuringiensis IBL 4222], gi\|22... gi\|228977009, gi... - gi\|228977009\|ref\|ZP_04137416.1\| GMP synthase, large subunit [Bacillus thuringiensis Bt407], gi\|22878... gi\|74490054, gi\|... - gi\|75762461\|ref\|ZP_00742326.1\| GMP synthase (glutamine-hydrolyzing) [Bacillus thuringiensis serovar ... gi\|228789288, gi... - gi\|228970439\|ref\|ZP_04131093.1\| GMP synthase, large subunit [Bacillus thuringiensis serovar thuringi...	187.0	[0..3]	[218..11]
GUAA_BACCR - GMP synthase [glutamine-hydrolyzing] OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBR... gi\|229125762, gi... - gi\|229125762\|ref\|ZP_04254790.1\| GMP synthase, large subunit [Bacillus cereus BDRD-Cer4], gi\|22865770...	187.0	[0..3]	[218..11]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIHYIMHAP FEKLSAIEVW ATQKSYDLSG THVYKGEKLP RALNFDCLIL MGGPQSPFKT  60
   61 DKYPYLLDEI QFVKKALAGN KKILGICLGA QLIAEALGAK TLHSPYKEIG IYPIQTLPEA 120
  121 TDDPFFSKLP KSFDVMHWHN DMPGIPKDVV LLAKGEGCPH QAFRYGDRVY GFQFHMELTL 180
  181 SVIEEMIEKY RGDLEPGKFV RTKEEMLHSN YNEVNAKMFT FLDYLEGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	1gpmA
Description:	GMP synthetase; GMP synthetase, central domain; GMP synthetase C-terminal dimerisation domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.67435536171189	bayes_pls_golite062009
ligase activity	0.0238422970481118	bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor	5.21123699382953E-4	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: