YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541308, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541308, gi|....

Description	E-value	Query Range	Subject Range
gi\|116250536, gi... - gi\|116250536\|ref\|YP_766374.1\| putrescine ABC transporter ATP-binding protein [Rhizobium leguminosaru...	285.0	[0..27]	[258..17]
gi\|113726386, gi... - gi\|150395538\|ref\|YP_001326005.1\| spermidine/putrescine ABC transporter ATPase subunit [Sinorhizobium...	284.0	[0..27]	[258..17]
gi\|15073645 - gi\|15073645\|emb\|CAC45287.1\| Probable putrescine transport ATP-binding protein [Sinorhizobium melilot... gi\|15964468 - gi\|15964468\|ref\|NP_384821.1\| putrescine ABC transporter ATP-binding protein [Sinorhizobium meliloti ...	284.0	[0..27]	[258..18]
gi\|46143847 - gi\|46143847\|ref\|ZP_00204582.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com... gi\|165875837, gi... - gi\|165975736\|ref\|YP_001651329.1\| putrescine/spermidine ABC transporter ATPase protein [Actinobacillu... gi\|126207768, gi... - gi\|126207768\|ref\|YP_001052993.1\| putrescine/spermidine ABC transporter ATPase protein [Actinobacillu...	283.0	[0..30]	[258..7]
gi\|221236171, gi... - gi\|221236171\|ref\|YP_002518608.1\| spermidine/putrescine transport ATP-binding protein potA [Caulobact... gi\|25384753 - pir\|\|D87637 hypothetical protein CC3134 [imported] - Caulobacter crescentus gi\|16127364, gi\|... - gi\|16127364\|ref\|NP_421928.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Caulobacter...	283.0	[0..27]	[258..9]
POTA_PSYCK - Spermidine/putrescine import ATP-binding protein PotA OS=Psychrobacter cryohalolentis (strain K5) GN...	282.0	[0..23]	[258..12]
gi\|86356366, gi\|... - gi\|86356366\|ref\|YP_468258.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Rhizobium e...	282.0	[0..27]	[258..17]
gi\|15602129, gi\|... - gi\|15602129\|ref\|NP_245201.1\| putrescine/spermidine ABC transporter ATPase protein [Pasteurella multo...	278.0	[0..25]	[258..13]
gi\|119720457, gi... - gi\|119720457\|ref\|YP_920952.1\| spermidine/putrescine ABC transporter ATPase subunit [Thermofilum pend...	278.0	[0..31]	[257..2]
POTA_HAEDU - Spermidine/putrescine import ATP-binding protein potA OS=Haemophilus ducreyi GN=potA PE=3 SV=1 POTA_HAEDU - Spermidine/putrescine import ATP-binding protein PotA OS=Haemophilus ducreyi (strain 35000HP / ATCC ...	278.0	[0..30]	[258..7]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNYIELQSV SIEIPVFDAN RSFRRSLANR LGGEINRNEK KKVYITALHD ISFSLKKGDR  60
   61 LGLIGHNGAG KTTLLRLLAH IYRPTKGQYI CRGRVTSLFS INLGMDMDDT GLENIHTIGM 120
  121 FLGMTKQELK KKQDEIIEFS ELDDFIHLPL RTYSSGMLTR LSFALATALE PDILLMDEGI 180
  181 GAGDANFAEK AKNRLNDFYK NINTLVLASH SDELIKKLCN KAILLEHGSI KAFGDVDEII 240
  241 SVYRGKGALK KMNSVSCY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits