YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541307, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541307, gi|....

Description	E-value	Query Range	Subject Range
gi\|110603650, gi... - gi\|110603650\|ref\|ZP_01391726.1\| daunorubicin resistance ABC transporter membrane protein [Methanocul...	175.0	[0..43]	[278..347]
gi\|159899650, gi... - gi\|159899650\|ref\|YP_001545897.1\| ABC-2 type transporter [Herpetosiphon aurantiacus ATCC 23779], gi\|1...	151.0	[0..21]	[283..293]
gi\|77966199, gi\|... - gi\|78065454\|ref\|YP_368223.1\| ABC polysaccharide/polyol phosphate export pump, inner membrane subunit...	139.0	[0..28]	[287..33]
gi\|67532929, gi\|... - gi\|67545860\|ref\|ZP_00423779.1\| ABC-2 [Burkholderia vietnamiensis G4], gi\|67532929\|gb\|EAM29705.1\| ABC...	139.0	[0..28]	[287..33]
gi\|109648354, gi... - gi\|68207280\|ref\|ZP_00559447.1\| ABC transporter, family 2 [Desulfitobacterium hafniense DCB-2], gi\|68...	138.0	[0..38]	[287..243]
gi\|76166721, gi\|... - gi\|76258192\|ref\|ZP_00765848.1\| ABC-2 [Chloroflexus aurantiacus J-10-fl], gi\|76166721\|gb\|EAO60845.1\| ...	137.0	[0..33]	[283..378]
gi\|149906025, gi... - gi\|82748544\|ref\|ZP_00911026.1\| similar to ABC-type polysaccharide/polyol phosphate export systems pe...	136.0	[0..27]	[287..193]
gi\|25026734, gi\|... - gi\|25026734\|ref\|NP_736788.1\| putative O-antigen export system permease protein [Corynebacterium effi...	134.0	[0..27]	[287..59]
gi\|41324431, gi\|... - gi\|62389098\|ref\|YP_224500.1\| polysaccharide/polyol phosphate export systems, permease component [Cor...	134.0	[0..28]	[287..35]
gi\|108801956, gi... - gi\|108801956\|ref\|YP_642153.1\| ABC-2 type transporter [Mycobacterium sp. MCS], gi\|108772375\|gb\|ABG110... gi\|92913316, gi\|... - gi\|92913316\|ref\|ZP_01281945.1\| ABC-2 [Mycobacterium sp. KMS], gi\|92442578\|gb\|EAT00416.1\| ABC-2 [Myco... gi\|126437937, gi... - gi\|92908904\|ref\|ZP_01277682.1\| ABC-2 [Mycobacterium sp. JLS], gi\|92433366\|gb\|EAS92699.1\| ABC-2 [Myco...	134.0	[0..26]	[287..13]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDVTNQLVQ DLAEPIITID KKHLPVFIGA QDYFKGFKEW NLWLYMAYAE IRRRYKRTLI  60
   61 GPFWATLSIA IFIGSMGFLL ATL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WHREIRSYLP FFASSYVVWI FFSTTLSESC TTFIANESYM KQIALPYSFY AFLVVSRNVM  60
   61 VFFHHFVVFL TVALIFHLHI THNTWLVIPG FALLILNCSW IAIALGLVCA RVRDIQQIVT 120
  121 SILQIAMFIT PIFWSESQLG HGKIALLIIN LNPIYHFISV VRYPLMGEPA SLVSWMANIL 180
  181 ILVVGWTFTM VYLGRNYNKL IYWL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits