YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29653980, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29653980, gi|....

Description	E-value	Query Range	Subject Range
gi\|223488779, gi... - gi\|254479407\|ref\|ZP_05092739.1\| Glycerophosphoryl diester phosphodiesterase family protein [Carboxyd... gi\|20807473 - gi\|20807473\|ref\|NP_622644.1\| Glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon... gi\|20807473, gi\|... - gi\|20807473\|ref\|NP_622644.1\| glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon...	264.0	[0..14]	[249..2]
gi\|242257355, gi... - gi\|242257355\|ref\|ZP_04802223.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter sp. X513... gi\|241904084, gi... - gi\|241904084\|ref\|ZP_04788795.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter brockii ... gi\|114844053, gi... - gi\|167040045\|ref\|YP_001663030.1\| glycerophosphodiester phosphodiesterase [Thermoanaerobacter sp. X51... gi\|166856211, gi... - gi\|76797455\|ref\|ZP_00779769.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter ethanolic...	256.0	[0..14]	[249..2]
gi\|18144079, gi\|... - gi\|18309403\|ref\|NP_561337.1\| glycerophosphodiester phosphodiesterase [Clostridium perfringens str. 1...	255.0	[0..12]	[250..1]
gi\|110800595, gi... - gi\|110800595\|ref\|YP_694881.1\| putative glycerophosphoryl diester phosphodiesterase [Clostridium perf...	253.0	[0..12]	[250..1]
gi\|110801784, gi... - gi\|110801784\|ref\|YP_697749.1\| glycerophosphoryl diester phosphodiesterase [Clostridium perfringens S...	252.0	[0..12]	[250..1]
gi\|51893596, gi\|... - gi\|51893596\|ref\|YP_076287.1\| glycerophosphodiester phosphodiesterase [Symbiobacterium thermophilum I...	249.0	[0..14]	[250..1]
gi\|229134982, gi... - gi\|229134982\|ref\|ZP_04263788.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus cereus BDRD-ST... gi\|228747972, gi... - gi\|229013379\|ref\|ZP_04170519.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus mycoides DSM 2... gi\|163864116, gi... - gi\|89207000\|ref\|ZP_01185549.1\| Glycerophosphodiester phosphodiesterase [Bacillus weihenstephanensis ...	244.0	[0..14]	[250..1]
gi\|25487769 - pir\|\|D84112 glycerophosphoryl diester phosphodiesterase glpQ [imported] - Bacillus halodurans (strai... gi\|10176324, gi\|... - gi\|15616262\|ref\|NP_244567.1\| glycerophosphoryl diester phosphodiesterase [Bacillus halodurans C-125]...	244.0	[0..7]	[247..31]
gi\|209363856, gi... - gi\|209363856\|ref\|YP_001424059.2\| glycerophosphoryl diester phosphodiesterase [Coxiella burnetii Dugw... gi\|94491127 - gi\|94491127\|ref\|ZP_01298345.1\| hypothetical protein CburD_01001766 [Coxiella burnetii Dugway 7E9-12]	242.0	[0..1]	[250..1]
gi\|42739215, gi\|... - gi\|42783287\|ref\|NP_980534.1\| glycerophosphoryl diester phosphodiesterase family protein [Bacillus ce...	242.0	[0..14]	[250..1]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLHIKMKTT QLNLPKVIAH RGASLSAPEN TVAALREAKR LGARWVEFDV RLTRDGQAII  60
   61 FHDPWLGRTT NGRGMVSKAH YAHIAELDAG NWFNPQFANE RVPTFAEYLK EAASLNLGVN 120
  121 IELKATPSHA SDLAKQVFQE LKEHWPVWLP KPLISSFSLA CLRAMREQSD DCLLGYLPNR 180
  181 WRDNWEALLA ANQCVSIHLN YKQLTAERIK MIKQTSYYLL AYTVNDSQLA TDLLSQGVDA 240
  241 VVSDNPELLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.0
Match:	2otdA
Description:	No description for 2otdA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits