YRC Public Data Repository - Protein Structure Prediction

Protein:	NADD_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NADD_COXBU.

Description	E-value	Query Range	Subject Range
gi\|23104126, gi\|... - gi\|67154137\|ref\|ZP_00415882.1\| Cytidyltransferase-related domain:Probable nicotinate-nucleotide aden... gi\|67088270, gi\|... - gi\|67154137\|ref\|ZP_00415882.1\| Cytidyltransferase-related domain:Probable nicotinate-nucleotide aden...	207.0	[0..1]	[213..1]
NADD_PSEF5 - Probable nicotinate-nucleotide adenylyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BA...	205.0	[0..1]	[214..1]
gi\|83753743, gi\|... - gi\|83753746\|pdb\|1YUN\|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide Adenylyltransfera...	204.0	[0..1]	[214..21]
gi\|254242690, gi... - gi\|84325138\|ref\|ZP_00973178.1\| COG1057: Nicotinic acid mononucleotide adenylyltransferase [Pseudomon... gi\|107103521 - gi\|107103521\|ref\|ZP_01367439.1\| hypothetical protein PaerPA_01004591 [Pseudomonas aeruginosa PACS2]	204.0	[0..1]	[214..1]
gi\|77461194, gi\|... - gi\|77461194\|ref\|YP_350701.1\| nicotinic acid mononucleotide adenylyltransferase [Pseudomonas fluoresc...	204.0	[0..2]	[214..17]
NADD_PSEAB - Probable nicotinate-nucleotide adenylyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=... NADD_PSEAE - Probable nicotinate-nucleotide adenylyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PA... NADD_PSEAE - Probable nicotinate-nucleotide adenylyltransferase OS=Pseudomonas aeruginosa GN=nadD PE=1 SV=1 NADD_PSEA8 - Probable nicotinate-nucleotide adenylyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=nadD... gi\|84319225, gi\|... - gi\|84319225\|ref\|ZP_00967626.1\| COG1057: Nicotinic acid mononucleotide adenylyltransferase [Pseudomon...	204.0	[0..1]	[214..1]
NADD_PSEA7 - Probable nicotinate-nucleotide adenylyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=nadD PE...	202.0	[0..1]	[214..1]
gi\|21325123, gi\|... - gi\|62391195\|ref\|YP_226597.1\| nicotinic acid mononucleotide adenylyltransferase [Corynebacterium glut...	201.0	[0..4]	[214..18]
gi\|91071261, gi\|... - gi\|91209687\|ref\|YP_539673.1\| nicotinic acid mononucleotide adenylyltransferase [Escherichia coli UTI... gi\|26107019, gi\|... - gi\|26246620\|ref\|NP_752660.1\| nicotinic acid mononucleotide adenylyltransferase [Escherichia coli CFT...	200.0	[0..1]	[214..22]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPLLGLFGG TFDPIHKGHL ALANELIQKL PSLTEIQFIP SRQPPHRPSP LASPADRLEM  60
   61 IKRAIANQPN LILNDVEIKG NDISYTINTL KILRPLFLTH ALCFILSTDA FADFKHWHQS 120
  121 SVILEYCHLI VVNRPNYRLP QQPWLSDLLS HHQTENAEDL GRFQFGKIFF QTLSPRPISA 180
  181 TQIRHYLAKG DYEIVAPLLP KTVLTYIKAH KLYQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	1yulA
Description:	Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits