YRC Public Data Repository - Protein Structure Prediction

Protein:	EX7S_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EX7S_COXBU.

Description	E-value	Query Range	Subject Range
gi\|71898769, gi\|... - gi\|71898769\|ref\|ZP_00680938.1\| Exonuclease VII, small subunit [Xylella fastidiosa Ann-1], gi\|7173153...	98.0	[0..1]	[77..49]
gi\|71274977, gi\|... - gi\|71274977\|ref\|ZP_00651265.1\| Exonuclease VII, small subunit [Xylella fastidiosa Dixon], gi\|7116470... gi\|71729918, gi\|... - gi\|71900343\|ref\|ZP_00682478.1\| Exonuclease VII, small subunit [Xylella fastidiosa Ann-1], gi\|7172991...	97.0	[0..1]	[77..49]
gi\|67085211, gi\|... - gi\|67157942\|ref\|ZP_00419087.1\| Exonuclease VII, small subunit [Azotobacter vinelandii AvOP], gi\|6708... gi\|67157942 - gi\|67157942\|ref\|ZP_00419087.1\| Exonuclease VII, small subunit [Azotobacter vinelandii AvOP]	93.0	[0..1]	[80..24]
EX7S_ERWCT - Exodeoxyribonuclease 7 small subunit OS=Erwinia carotovora subsp. atroseptica GN=xseB PE=3 SV=1 EX7S_PECAS - Exodeoxyribonuclease 7 small subunit OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672...	92.0	[0..1]	[81..1]
gi\|83593949, gi\|... - gi\|83593949\|ref\|YP_427701.1\| exodeoxyribonuclease VII small subunit [Rhodospirillum rubrum ATCC 1117...	90.0	[0..6]	[77..49]
EX7S_SHISS - Exodeoxyribonuclease 7 small subunit OS=Shigella sonnei (strain Ss046) GN=xseB PE=3 SV=1	89.0	[0..1]	[80..1]
gi\|89952462, gi\|... - gi\|90022862\|ref\|YP_528689.1\| exodeoxyribonuclease VII small subunit [Saccharophagus degradans 2-40],...	89.0	[0..5]	[79..38]
gi\|75238749, gi\|... - gi\|75238749\|ref\|ZP_00722737.1\| COG1722: Exonuclease VII small subunit [Escherichia coli F11], gi\|191... EX7S_ECOL5 - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=xseB PE=3...	88.0	[0..1]	[80..1]
EX7S_ECOLU - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=xseB... EX7S_ECO7I - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=xseB PE=3 S... EX7S_ECOUT - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli (strain UTI89 / UPEC) GN=xseB PE=3 SV=1 gi\|13359933, gi\|... - gi\|15829730\|ref\|NP_308503.1\| exodeoxyribonuclease VII small subunit [Escherichia coli O157:H7 str. S... EX7S_ECO27 - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=xseB PE... EX7S_ECO5E - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=xseB PE=3... EX7S_ESCF3 - Exodeoxyribonuclease 7 small subunit OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC ... gi\|217320966, gi... - gi\|217324745\|ref\|ZP_03440829.1\| exodeoxyribonuclease VII, small subunit [Escherichia coli O157:H7 st... EX7S_SHIF8 - Exodeoxyribonuclease 7 small subunit OS=Shigella flexneri serotype 5b (strain 8401) GN=xseB PE=3 SV=... EX7S_ECO45 - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=xseB PE=3 SV... EX7S_ECO8A - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O8 (strain IAI1) GN=xseB PE=3 SV=1 EX7S_SHIFL - Exodeoxyribonuclease 7 small subunit OS=Shigella flexneri GN=xseB PE=3 SV=2 EX7S_ECO55 - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli (strain 55989 / EAEC) GN=xseB PE=3 SV=1 EX7S_ECO81 - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O81 (strain ED1a) GN=xseB PE=3 SV=1 gi\|124500204, gi... - gi\|124528867\|ref\|ZP_01700052.1\| exodeoxyribonuclease VII, small subunit [Escherichia coli B], gi\|124... EG11098 - exonuclease VII small subunit / Exonuclease VII, small subunit sp\|B7UJP5\|EX7S_ECO27 - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=xseB PE... gi\|254591006, gi... - gi\|254791606\|ref\|YP_003076443.1\| exonuclease VII small subunit [Escherichia coli O157:H7 str. TW1435... EX7S_ECOLC - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=x... gi\|24050588, gi\|... - gi\|24111800\|ref\|NP_706310.1\| exodeoxyribonuclease VII small subunit [Shigella flexneri 2a str. 301],... gi\|168800304, gi... - gi\|189377381\|gb\|EDU95797.1\| exodeoxyribonuclease VII, small subunit [Escherichia coli O157:H7 str. E... EX7S_ECOLI - Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonucl... gi\|168786268, gi... - gi\|189373536\|gb\|EDU91952.1\| exodeoxyribonuclease VII, small subunit [Escherichia coli O157:H7 str. E... gi\|30061916, gi\|... - gi\|30061916\|ref\|NP_836087.1\| exodeoxyribonuclease VII small subunit [Shigella flexneri 2a str. 2457T... EX7S_ECOSM - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=xseB PE=3 SV=1 EX7S_ECOL6 - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ... EX7S_ECODH - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli (strain K12 / DH10B) GN=xseB PE=3 SV=1 EG11098 - exonuclease VII small subunit / Exonuclease VII, small subunit gi\|208807418, gi... - gi\|208807418\|ref\|ZP_03249755.1\| exodeoxyribonuclease VII, small subunit [Escherichia coli O157:H7 st... EX7S_ECO57 - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O157:H7 GN=xseB PE=3 SV=2 gi\|195938511 - gi\|195938511\|ref\|ZP_03083893.1\| exodeoxyribonuclease VII small subunit [Escherichia coli O157:H7 str... gi\|208823131, gi... - gi\|208823131\|ref\|ZP_03263449.1\| exodeoxyribonuclease VII, small subunit [Escherichia coli O157:H7 st... gi\|12513278, gi\|... - gi\|15800152\|ref\|NP_286164.1\| exodeoxyribonuclease VII small subunit [Escherichia coli O157:H7 EDL933... gi\|208815238, gi... - gi\|208815238\|ref\|ZP_03256417.1\| exodeoxyribonuclease VII, small subunit [Escherichia coli O157:H7 st... gi\|189356018, gi... - gi\|189356018\|gb\|EDU74437.1\| exodeoxyribonuclease VII, small subunit [Escherichia coli O157:H7 str. E... gi\|168749883, gi... - gi\|188015922\|gb\|EDU54044.1\| exodeoxyribonuclease VII, small subunit [Escherichia coli O157:H7 str. E... gi\|168768372, gi... - gi\|189362452\|gb\|EDU80871.1\| exodeoxyribonuclease VII, small subunit [Escherichia coli O157:H7 str. E... gi\|189367960, gi... - gi\|189367960\|gb\|EDU86376.1\| exodeoxyribonuclease VII, small subunit [Escherichia coli O157:H7 str. E... gi\|188999343, gi... - gi\|188999343\|gb\|EDU68329.1\| exodeoxyribonuclease VII, small subunit [Escherichia coli O157:H7 str. E... gi\|187768325, gi... - gi\|187768325\|gb\|EDU32169.1\| exodeoxyribonuclease VII, small subunit [Escherichia coli O157:H7 str. E... gi\|190903243, gi... - gi\|75230147\|ref\|ZP_00716651.1\| COG1722: Exonuclease VII small subunit [Escherichia coli B7A], gi\|191... gi\|192958058, gi... - gi\|75237196\|ref\|ZP_00721243.1\| COG1722: Exonuclease VII small subunit [Escherichia coli E110019], gi... gi\|193065193, gi... - gi\|75256794\|ref\|ZP_00728399.1\| COG1722: Exonuclease VII small subunit [Escherichia coli E22], gi\|193... gi\|188492153, gi... - gi\|75512483\|ref\|ZP_00735022.1\| COG1722: Exonuclease VII small subunit [Escherichia coli 53638], gi\|1... EX7S_ECOL6 - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O6 GN=xseB PE=3 SV=2 EX7S_SHIDS - Exodeoxyribonuclease 7 small subunit OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=xseB PE=3 ... EX7S_SHIBS - Exodeoxyribonuclease 7 small subunit OS=Shigella boydii serotype 4 (strain Sb227) GN=xseB PE=3 SV=1 gi\|89107292, gi\|... - gi\|89107292\|ref\|AP_001072.1\| exonuclease VII small subunit [Escherichia coli str. K-12 substr. W3110... gi\|194432556, gi... - gi\|83570310\|ref\|ZP_00921755.1\| COG1722: Exonuclease VII small subunit [Shigella dysenteriae 1012], g... gi\|194422149, gi... - gi\|83585659\|ref\|ZP_00924301.1\| COG1722: Exonuclease VII small subunit [Escherichia coli 101-1], gi\|1... EX7S_SHIB3 - Exodeoxyribonuclease 7 small subunit OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=... EX7S_ECO24 - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=xseB PE... EX7S_ECOHS - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli O9:H4 (strain HS) GN=xseB PE=3 SV=1 gi\|75209978, gi\|... - gi\|75209978\|ref\|ZP_00710167.1\| COG1722: Exonuclease VII small subunit [Escherichia coli B171], gi\|19... gi\|227884570, gi... - gi\|227884570\|ref\|ZP_04002375.1\| exodeoxyribonuclease VII small subunit [Escherichia coli 83972], gi\|... gi\|226898794, gi... - gi\|237707584\|ref\|ZP_04538065.1\| exonuclease VII [Escherichia sp. 3_2_53FAA], gi\|226898794\|gb\|EEH8505... EX7S_ECOBW - Exodeoxyribonuclease 7 small subunit OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=xseB PE=3... gi\|242376200, gi... - gi\|251783927\|ref\|YP_002998231.1\| hypothetical protein B21_00374 [Escherichia coli BL21], gi\|24237620... gi\|254287292, gi... - gi\|254287292\|ref\|YP_003053040.1\| exodeoxyribonuclease VII small subunit [Escherichia coli BL21(DE3)]... gi\|253972389, gi... - gi\|254160488\|ref\|YP_003043596.1\| exodeoxyribonuclease VII small subunit [Escherichia coli B str. REL...	88.0	[0..1]	[80..1]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRKKTENFN FEASLNELTA LVEKLEQGDL TLEESLQNFE RGVGLVRSCQ QALSDAEQKV  60
   61 KVLINQDGAE TLVPFELETK TD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	1vp7A
Description:	Crystal structure of Exodeoxyribonuclease VII small subunit (NP_881400.1) from Bordetella pertussis at 2.40 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits