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View Structure Prediction Details

Protein: gi|29541021, gi|...
Organism: Coxiella burnetii RSA 493
Length: 136 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541021, gi|....

Description E-value Query
Range
Subject
Range
FMM1_NEIGO - Fimbrial protein OS=Neisseria gonorrhoeae GN=pilE1 PE=1 SV=2
123.0 [0..9] [134..1]
gi|2073462 - gi|2073462|emb|CAA73472.1| pilE [Neisseria meningitidis]
117.0 [0..9] [134..1]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFIQNSVMR VNLSGFSLLE LLIAMAMAAI LTVIAYPAYR YYLVAANRRS AEVGLLRIAS  60
   61 RLEEFHSLNE TYQGATLSHL KIENESRDYL FQLSQLTTES YLIKAIPQAK QAADHCGTLS 120
  121 IDQSGHQKAS ESGCWN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 1ay2A
Description: STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle