YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29540978, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29540978, gi|....

Description	E-value	Query Range	Subject Range
gi\|4982229, gi\|1... - gi\|4982229\|gb\|AAD36722.1\|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8], gi\|15644403... gi\|7444020 - pir\|\|D72228 response regulator DrrA - Thermotoga maritima (strain MSB8)	221.0	[0..16]	[247..9]
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	220.0	[0..16]	[240..1]
gi\|1575577 - gi\|1575577\|gb\|AAC44436.1\| DNA-binding response regulator [Thermotoga maritima]	219.0	[0..16]	[247..1]
gi\|110801119, gi... - gi\|110801119\|ref\|YP_695076.1\| DNA-binding response regulator [Clostridium perfringens ATCC 13124], g...	216.0	[0..16]	[244..1]
gi\|25300922 - pir\|\|G97109 response regulator (CheY-like receiver domain and DNA-binding HTH domain) [imported] - C... gi\|15894977, gi\|... - gi\|15894977\|ref\|NP_348326.1\| response regulator [Clostridium acetobutylicum ATCC 824], gi\|15024664\|g...	216.0	[0..16]	[240..1]
gi\|82945310, gi\|... - gi\|83310469\|ref\|YP_420733.1\| response regulator [Magnetospirillum magneticum AMB-1], gi\|82945310\|dbj...	216.0	[0..8]	[246..1]
gi\|42780487, gi\|... - gi\|42780487\|ref\|NP_977734.1\| DNA-binding response regulator [Bacillus cereus ATCC 10987], gi\|4273640... gi\|222095033, gi... - gi\|222095033\|ref\|YP_002529093.1\| response regulator [Bacillus cereus Q1], gi\|221239091\|gb\|ACM11801.1... gi\|217068126, gi... - gi\|217958874\|ref\|YP_002337422.1\| DNA-binding response regulator [Bacillus cereus AH187], gi\|21706812... gi\|206977570, gi... - gi\|206977570\|ref\|ZP_03238464.1\| DNA-binding response regulator [Bacillus cereus H3081.97], gi\|206744...	215.0	[0..16]	[241..1]
gi\|18144301, gi\|... - gi\|18309624\|ref\|NP_561558.1\| DNA-binding response regulator [Clostridium perfringens str. 13], gi\|18...	215.0	[0..16]	[244..1]
gi\|47556738, gi\|... - gi\|47566185\|ref\|ZP_00237213.1\| two-component response regulator [Bacillus cereus G9241], gi\|47556738...	214.0	[0..16]	[241..1]
gi\|89205778, gi\|... - gi\|89205778\|ref\|ZP_01184345.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	213.0	[0..16]	[243..1]

Back

Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYNSEILRT NEFISVRKIK LLIIEDEIAI RDMVRFSLPD EFELLDAEDT AKAIKQLAAQ  60
   61 IPDLILLDWM LPGKSGIEFI EWIKQKEIWQ DIPIVLLTAK AEEENKVRGL MSGADDYITK 120
  121 PFSPDELIAR IRAILRRGPL ISSNQEIKIG DIKINTAKHL VTVKDEHIAL SPTEYKMLHF 180
  181 FMKHPNKTYS RDQLITYIWG GNIYIDDRTV DVQVRRLRDK LKKYDHHHLI KTIRGAGYQL 240
  241 STDDTKNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits