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View Structure Prediction Details

Protein: gi|29540977, gi|...
Organism: Coxiella burnetii RSA 493
Length: 252 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29540977, gi|....

Description E-value Query
Range
Subject
Range
gi|68186676, gi|... - gi|91772668|ref|YP_565360.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides b...
257.0 [0..2] [249..200]
gi|20907888, gi|... - gi|21229307|ref|NP_635229.1| two component system histidine kinase [Methanosarcina mazei Go1], gi|20...
251.0 [0..2] [250..320]
gi|73668585, gi|... - gi|73668585|ref|YP_304600.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusa...
247.0 [0..2] [250..478]
gi|42521923, gi|... - gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100...
243.0 [0..3] [249..729]
gi|87309080, gi|... - gi|87309080|ref|ZP_01091217.1| sensory box sensor histidine kinase/response regulator [Blastopirellu...
240.0 [0..4] [248..469]

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Predicted Domain #1
Region A:
Residues: [1-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQRTHKLNL KKLPKAVREH INQLERIRSD FVANVSHELR TPLTVIRGYL ETLLKKEVRD  60
   61 SKSYQKIFQQ MYQHSARMET IIDDLLLLSR LESDDHPTEE KMNVAVPEIL KTLCADAERI 120
  121 SGEKQHFIQL KAEPNLYISG SEEELKSLFS NIIINSVKYT PSKGRINVKW YRDDDHAVFS 180
  181 VVDTGIGIAK VHIPRITERF YRVDKARSRE SGGTGLGLAI VKHVLMRHDG ELHIESEPGK 240
  241 GSIFTCRFPL VS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.522879
Match: 2c2aA
Description: Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle