YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29540910, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29540910, gi|....

Description	E-value	Query Range	Subject Range
gi\|72397850, gi\|... - gi\|73670688\|ref\|YP_306703.1\| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri str. ...	257.0	[0..2]	[255..6]
gi\|147920374, gi... - gi\|147920374\|ref\|YP_685852.1\| exodeoxyribonuclease III [uncultured methanogenic archaeon RC-I], gi\|1...	255.0	[0..1]	[254..4]
gi\|19916002, gi\|... - gi\|20090923\|ref\|NP_616998.1\| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina acetivorans C...	255.0	[0..2]	[257..6]
gi\|28211273, gi\|... - gi\|28211273\|ref\|NP_782217.1\| exodeoxyribonuclease III [Clostridium tetani E88], gi\|28203713\|gb\|AAO36...	253.0	[0..1]	[256..4]
gi\|60493498, gi\|... - gi\|60682064\|ref\|YP_212208.1\| exodeoxyribonuclease [Bacteroides fragilis NCTC 9343], gi\|60493498\|emb\|... gi\|52216716, gi\|... - gi\|53713851\|ref\|YP_099843.1\| exodeoxyribonuclease [Bacteroides fragilis YCH46], gi\|52216716\|dbj\|BAD4... gi\|251946092, gi... - gi\|253565813\|ref\|ZP_04843268.1\| exodeoxyribonuclease [Bacteroides sp. 3_2_5], gi\|251946092\|gb\|EES864...	252.0	[0..1]	[253..1]
gi\|51246268, gi\|... - gi\|51246268\|ref\|YP_066152.1\| exodeoxyribonuclease (ExoA) [Desulfotalea psychrophila LSv54], gi\|50877...	251.0	[0..2]	[254..229]
gi\|20907825, gi\|... - gi\|21229250\|ref\|NP_635172.1\| exodeoxyribonuclease III [Methanosarcina mazei Go1], gi\|20907825\|gb\|AAM...	251.0	[0..2]	[255..6]
gi\|7447954 - pir\|\|B69126 exodeoxyribonuclease - Methanobacterium thermoautotrophicum (strain Delta H) gi\|15678240, gi\|... - gi\|2621258\|gb\|AAB84718.1\| exodeoxyribonuclease [Methanothermobacter thermautotrophicus str. Delta H]...	250.0	[0..1]	[255..4]
gi\|219670588, gi... - gi\|219670588\|ref\|YP_002461023.1\| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2], ... gi\|89897437, gi\|... - gi\|89897437\|ref\|YP_520924.1\| hypothetical protein DSY4691 [Desulfitobacterium hafniense Y51], gi\|893...	250.0	[0..1]	[253..1]
gi\|29337934, gi\|... - gi\|29346040\|ref\|NP_809543.1\| exodeoxyribonuclease [Bacteroides thetaiotaomicron VPI-5482], gi\|293379...	249.0	[0..1]	[254..1]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIITLNLNG IRAAARRGFF DWLKRQKADI VCLQETKACL EITNGDQFHP KGYHCYYHDA  60
   61 EKSGYSGVGI YCREKPDRVT TRLGWEHADK EGRYIQADFG SLSVASLYMP SGTTGEHRQK 120
  121 IKFDFMDRYM KRLKNIVHSK RSFIICGDWN IVHKEIDIKN FKSNQKYSGC LPEERAWLDE 180
  181 VFTKVGLVDA FRVVNQKPDQ YTWWSSRGRA WEKNVGWRID YQVITSDLKN SVKSERIYKD 240
  241 KRFSDHAPLI IDYEREISD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.0
Match:	2jc5A
Description:	No description for 2jc5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits