YRC Public Data Repository - Protein Structure Prediction

Protein:	COAD_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COAD_COXBU.

Description	E-value	Query Range	Subject Range
COAD_PHODP - Phosphopantetheine adenylyltransferase OS=Photobacterium damsela subsp. piscicida GN=coaD PE=3 SV=1	181.0	[0..1]	[157..1]
gi\|71556883, gi\|... - gi\|71736330\|ref\|YP_276889.1\| phosphopantetheine adenylyltransferase [Pseudomonas syringae pv. phaseo...	179.0	[0..4]	[159..31]
COAD_PSEAE - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PR... COAD_PSEAB - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=coaD PE=3 SV... gi\|94414802 - gi\|94414802\|ref\|ZP_01294656.1\| hypothetical protein PaerP_01003382 [Pseudomonas aeruginosa PA7] gi\|84318612, gi\|... - gi\|84318612\|ref\|ZP_00967034.1\| COG0669: Phosphopantetheine adenylyltransferase [Pseudomonas aerugino... gi\|126196839, gi... - gi\|84324448\|ref\|ZP_00972506.1\| COG0669: Phosphopantetheine adenylyltransferase [Pseudomonas aerugino... COAD_PSEAE - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa GN=coaD PE=3 SV=1 gi\|107099347 - gi\|107099347\|ref\|ZP_01363265.1\| hypothetical protein PaerPA_01000359 [Pseudomonas aeruginosa PACS2] COAD_PSEA8 - Phosphopantetheine adenylyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=coaD PE=3 SV=1	178.0	[0..4]	[159..3]
tr\|F3GGS5\|F3GGS5... - Phosphopantetheine adenylyltransferase OS=Pseudomonas syringae pv. pisi str. 1704B GN=coaD PE=3 SV=1 COAD_PSEU2 - Phosphopantetheine adenylyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=coaD P...	177.0	[0..4]	[159..3]
gi\|90580914, gi\|... - gi\|90580914\|ref\|ZP_01236716.1\| phosphopantetheine adenylyltransferase [Vibrio angustum S14], gi\|9043...	176.0	[0..1]	[159..1]
gi\|95108558 - gi\|95108558\|emb\|CAK13252.1\| phosphopantetheine adenylyltransferase [Pseudomonas entomophila L48] COAD_PSEE4 - Phosphopantetheine adenylyltransferase OS=Pseudomonas entomophila (strain L48) GN=coaD PE=3 SV=1	176.0	[0..4]	[159..3]
COAD_IDILO - Phosphopantetheine adenylyltransferase OS=Idiomarina loihiensis GN=coaD PE=3 SV=1 COAD_IDILO - Phosphopantetheine adenylyltransferase OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L...	176.0	[0..1]	[157..1]
tr\|E4RAP8\|E4RAP8... - Phosphopantetheine adenylyltransferase OS=Pseudomonas putida (strain BIRD-1) GN=coaD PE=3 SV=1 COAD_PSEPK - Phosphopantetheine adenylyltransferase OS=Pseudomonas putida (strain KT2440) GN=coaD PE=3 SV=1	176.0	[0..4]	[159..3]
COAD_PSESM - Phosphopantetheine adenylyltransferase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=coaD PE... COAD_PSESM - Phosphopantetheine adenylyltransferase OS=Pseudomonas syringae pv. tomato GN=coaD PE=3 SV=1 gi\|213927585, gi... - gi\|213967809\|ref\|ZP_03395956.1\| pantetheine-phosphate adenylyltransferase [Pseudomonas syringae pv. ...	176.0	[0..4]	[159..3]
COAD_EXIS2 - Phosphopantetheine adenylyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / ...	175.0	[0..1]	[159..1]

Back

Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPIAIYPGT FDPLTNGHVD IIERALPLFN KIIVACAPTS RKDPHLKLEE RVNLIADVLT  60
   61 DERVEVLPLT GLLVDFAKTH QANFILRGLR AVSDFDYEFQ LAHMNYQLSP EIETIFLPAR 120
  121 EGYSYVSGTM VREIVTLGGD VSPFVPPLVA RHLQKRREK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.221849
Match:	1b6tA
Description:	Phosphopantetheine adenylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
pantetheine-phosphate adenylyltransferase activity	3.03187936898064	bayes_pls_golite062009
pantoate-beta-alanine ligase activity	2.81193878035427	bayes_pls_golite062009
catalytic activity	2.74718220535323	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	1.62370757945153	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	1.62370757945153	bayes_pls_golite062009
adenylyltransferase activity	1.61625530385033	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	1.61089358601097	bayes_pls_golite062009
ligase activity	1.15322915814026	bayes_pls_golite062009
nicotinate-nucleotide adenylyltransferase activity	0.46461802137308	bayes_pls_golite062009
nicotinamide-nucleotide adenylyltransferase activity	0.21096109874233	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: