YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29540838, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29540838, gi|....

Description	E-value	Query Range	Subject Range
gi\|37524442, gi\|... - gi\|37524442\|ref\|NP_927786.1\| preprotein translocase subunit SecE [Photorhabdus luminescens subsp. la...	128.0	[0..1]	[126..1]
gi\|50119177, gi\|... - gi\|50119177\|ref\|YP_048344.1\| preprotein translocase subunit SecE [Pectobacterium atrosepticum SCRI10...	127.0	[0..1]	[126..1]
gi\|238713529, gi... - gi\|77957018\|ref\|ZP_00821087.1\| COG0690: Preprotein translocase subunit SecE [Yersinia bercovieri ATC... gi\|77960658 - gi\|77960658\|ref\|ZP_00824520.1\| COG0690: Preprotein translocase subunit SecE [Yersinia mollaretii ATC... gi\|238760250, gi... - gi\|238760250\|ref\|ZP_04621394.1\| Preprotein translocase subunit secE [Yersinia aldovae ATCC 35236], g... gi\|122087630, gi... - gi\|123440669\|ref\|YP_001004662.1\| preprotein translocase subunit SecE [Yersinia enterocolitica subsp.... gi\|77972255 - gi\|77972255\|ref\|ZP_00827827.1\| COG0690: Preprotein translocase subunit SecE [Yersinia frederiksenii ...	126.0	[0..1]	[126..1]
gi\|77977798, gi\|... - gi\|77977798\|ref\|ZP_00833238.1\| COG0690: Preprotein translocase subunit SecE [Yersinia intermedia ATC...	126.0	[0..1]	[126..1]
gi\|108774027, gi... - gi\|229900554\|ref\|ZP_04515680.1\| preprotein translocase membrane subunit [Yersinia pestis Nepal516], ... gi\|161484891 - gi\|161484891\|ref\|NP_667816.2\| preprotein translocase subunit SecE [Yersinia pestis KIM] gi\|186893633, gi... - gi\|186893633\|ref\|YP_001870745.1\| preprotein translocase subunit SecE [Yersinia pseudotuberculosis PB... gi\|229704187, gi... - gi\|229837499\|ref\|ZP_04457661.1\| preprotein translocase membrane subunit [Yersinia pestis Pestoides A... gi\|77635957, gi\|... - gi\|77635957\|ref\|ZP_00798036.1\| COG0690: Preprotein translocase subunit SecE [Yersinia pestis Angola]... gi\|229695801, gi... - gi\|229839435\|ref\|ZP_04459594.1\| preprotein translocase membrane subunit [Yersinia pestis biovar Orie... gi\|77631228, gi\|... - gi\|77631228\|ref\|ZP_00793814.1\| COG0690: Preprotein translocase subunit SecE [Yersinia pseudotubercul... Q66FQ8\|Q66FQ8_YERPS - Preprotein translocase SecE subunit - Yersinia pseudotuberculosis gi\|25301347 - pir\|\|AI0456 preprotein translocase SecE chain [imported] - Yersinia pestis (strain CO92) gi\|218930758, gi... - gi\|218930758\|ref\|YP_002348633.1\| preprotein translocase subunit SecE [Yersinia pestis CO92], gi\|1612... gi\|161511332 - gi\|161511332\|ref\|NP_994409.2\| preprotein translocase subunit SecE [Yersinia pestis biovar Microtus s... gi\|51587914, gi\|... - gi\|51594632\|ref\|YP_068823.1\| preprotein translocase subunit SecE [Yersinia pseudotuberculosis IP 329... gi\|165919658, gi... - gi\|165928319\|ref\|ZP_02224151.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Orienta... gi\|165938231, gi... - gi\|89103178\|ref\|ZP_01175767.1\| COG0690: Preprotein translocase subunit SecE [Yersinia pestis biovar ... gi\|166012041, gi... - gi\|166012041\|ref\|ZP_02232939.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Antiqua... gi\|108781529, gi... - gi\|108809616\|ref\|YP_653532.1\| preprotein translocase subunit SecE [Yersinia pestis Antiqua], gi\|1087... gi\|166214395, gi... - gi\|166214395\|ref\|ZP_02240430.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Antiqua... gi\|167048206, gi... - gi\|167402426\|ref\|ZP_02307886.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Antiqua... gi\|153997213, gi... - gi\|153997213\|ref\|ZP_02022320.1\| preprotein translocase SecE subunit [Yersinia pestis CA88-4125], gi\|... gi\|166957159, gi... - gi\|167422948\|ref\|ZP_02314701.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Orienta... gi\|145212690, gi... - gi\|145600994\|ref\|YP_001165070.1\| preprotein translocase subunit SecE [Yersinia pestis Pestoides F], ... gi\|167054185, gi... - gi\|167426803\|ref\|ZP_02318556.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Mediaev... gi\|170022591, gi... - gi\|170022591\|ref\|YP_001719096.1\| preprotein translocase subunit SecE [Yersinia pseudotuberculosis YP...	124.0	[0..1]	[126..1]
gi\|21957174, gi\|... - gi\|22124393\|ref\|NP_667816.1\| translocase [Yersinia pestis KIM], gi\|21957174\|gb\|AAM84067.1\|AE013648_9... gi\|45437736, gi\|... - gi\|45442870\|ref\|NP_994409.1\| translocase [Yersinia pestis biovar Microtus str. 91001], gi\|45437736\|g...	123.0	[0..1]	[126..6]
gi\|95927247, gi\|... - gi\|95927247\|ref\|ZP_01310008.1\| hypothetical protein CburR_01000940 [Coxiella burnetii RSA 331], gi\|1...	122.0	[0..1]	[127..1]
SECE_SALTI - Preprotein translocase subunit secE OS=Salmonella typhi GN=secE PE=3 SV=1 SECE_SALTI - Protein translocase subunit SecE OS=Salmonella typhi GN=secE PE=3 SV=1 gi\|16762306 - gi\|16762306\|ref\|NP_457923.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. enteric... SECE_SALTY - Protein translocase subunit SecE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=... gi\|29139429, gi\|... - gi\|29143794\|ref\|NP_807136.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. enteric... gi\|214001615 - gi\|214001615\|ref\|ZP_03412350.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|213852741 - gi\|213852741\|ref\|ZP_03382273.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|213650882 - gi\|213650882\|ref\|ZP_03380935.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|213623115 - gi\|213623115\|ref\|ZP_03375898.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|224585689, gi... - gi\|224585689\|ref\|YP_002639488.1\| translocase [Salmonella enterica subsp. enterica serovar Paratyphi ... SECE_SALTY - Preprotein translocase subunit secE OS=Salmonella typhimurium GN=secE PE=3 SV=1 lcl\|NC_016856.1_... - [gene=secE] [protein=preprotein translocase subunit SecE] [protein_id=YP_005240426.1] [location=4375... gi\|161366647, gi... - gi\|161617283\|ref\|YP_001591248.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ent... gi\|161505372, gi... - gi\|161505372\|ref\|YP_001572484.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ari... gi\|207859325, gi... - gi\|207859325\|ref\|YP_002245976.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ent... gi\|205274231, gi... - gi\|205354450\|ref\|YP_002228251.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ent... gi\|238913726 - gi\|238913726\|ref\|ZP_04657563.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... SECE_SALTY - Preprotein translocase subunit secE OS=Salmonella typhimurium GN=secE PE=3 SV=1 gi\|199603894, gi... - gi\|200386796\|ref\|ZP_03213408.1\| preprotein translocase subunit secE [Salmonella enterica subsp. ente... gi\|197937067, gi... - gi\|198242551\|ref\|YP_002218064.1\| preprotein translocase subunit secE [Salmonella enterica subsp. ent... gi\|213425732 - gi\|213425732\|ref\|ZP_03358482.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|213417732 - gi\|213417732\|ref\|ZP_03350852.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|213163866 - gi\|213163866\|ref\|ZP_03349576.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|213022867 - gi\|213022867\|ref\|ZP_03337314.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|194407918, gi... - gi\|194449614\|ref\|YP_002048134.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ent... gi\|194444349, gi... - gi\|194444349\|ref\|YP_002043399.1\| preprotein translocase subunit secE [Salmonella enterica subsp. ent... gi\|168264793, gi... - gi\|205346819\|gb\|EDZ33450.1\| preprotein translocase subunit secE [Salmonella enterica subsp. enterica... gi\|167554341, gi... - gi\|205321447\|gb\|EDZ09286.1\| preprotein translocase subunit secE [Salmonella enterica subsp. enterica... gi\|197364901, gi... - gi\|197364901\|ref\|YP_002144538.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ent... gi\|62182601, gi\|... - gi\|62182601\|ref\|YP_219018.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. enteric... gi\|197212550, gi... - gi\|197248847\|ref\|YP_002149058.1\| preprotein translocase subunit secE [Salmonella enterica subsp. ent... gi\|56415974, gi\|... - gi\|56415974\|ref\|YP_153049.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. enteric... gi\|194735761, gi... - gi\|194735761\|ref\|YP_002117050.1\| preprotein translocase subunit secE [Salmonella enterica subsp. ent... gi\|194469508, gi... - gi\|194469508\|ref\|ZP_03075492.1\| preprotein translocase subunit secE [Salmonella enterica subsp. ente...	122.0	[0..1]	[126..1]
gi\|37200100, gi\|... - gi\|37681349\|ref\|NP_935958.1\| preprotein translocase subunit SecE [Vibrio vulnificus YJ016], gi\|37200... gi\|27364610, gi\|... - gi\|27364610\|ref\|NP_760138.1\| preprotein translocase subunit SecE [Vibrio vulnificus CMCP6], gi\|27360...	121.0	[0..2]	[125..3]
gi\|229346973, gi... - gi\|229516070\|ref\|ZP_04405521.1\| preprotein translocase subunit SecE [Vibrio cholerae RC9], gi\|229346... gi\|229519860, gi... - gi\|229519860\|ref\|ZP_04409293.1\| preprotein translocase subunit SecE [Vibrio cholerae TM 11079-80], g... gi\|229506883, gi... - gi\|229506883\|ref\|ZP_04396391.1\| preprotein translocase subunit SecE [Vibrio cholerae BX 330286], gi\|... gi\|229508688, gi... - gi\|229508688\|ref\|ZP_04398182.1\| preprotein translocase subunit SecE [Vibrio cholerae B33], gi\|229354... gi\|254851631, gi... - gi\|254851631\|ref\|ZP_05240981.1\| preprotein translocase subunit SecE [Vibrio cholerae MO10], gi\|25484... gi\|15640349, gi\|... - gi\|9654735\|gb\|AAF93495.1\| preprotein translocase, SecE subunit [Vibrio cholerae O1 biovar El Tor str... gi\|229527017, gi... - gi\|229527017\|ref\|ZP_04416413.1\| preprotein translocase subunit SecE [Vibrio cholerae 12129(1)], gi\|2... gi\|11355818 - gi\|11355818\|pir\|\|H82337 preprotein translocase, SecE chain VC0322 [imported] - Vibrio cholerae (stra... gi\|229369052, gi... - gi\|229606397\|ref\|YP_002877045.1\| preprotein translocase subunit SecE [Vibrio cholerae MJ-1236], gi\|2... gi\|121627604, gi... - gi\|121730819\|ref\|ZP_01682891.1\| preprotein translocase, SecE subunit [Vibrio cholerae V52], gi\|12162... gi\|254292281, gi... - gi\|254292281\|ref\|ZP_04963027.1\| preprotein translocase, SecE subunit [Vibrio cholerae AM-19226], gi\|... gi\|153827144, gi... - gi\|153827144\|ref\|ZP_01979811.1\| preprotein translocase, SecE subunit [Vibrio cholerae MZO-2], gi\|149... gi\|146315718, gi... - gi\|227116728\|ref\|YP_002818624.1\| preprotein translocase, SecE subunit [Vibrio cholerae O395], gi\|227... gi\|227080534, gi... - gi\|227080534\|ref\|YP_002809085.1\| preprotein translocase, SecE subunit [Vibrio cholerae M66-2], gi\|22...	120.0	[0..2]	[125..8]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQSVTPEK KSRFDGLKWL LIVALLVAAI VAEFYYSQVA WAIRAAVGIV VVVILLAIAS  60
   61 QTDKGRRAWG FIKNARTELR KVVWPTRQET LQTTLVVIVM VVITALILWG LDSFFMWAIG 120
  121 WMAGQRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.09691
Match:	2akhZ
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits