YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29653536, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29653536, gi|....

Description	E-value	Query Range	Subject Range
gi\|34915829 - gi\|34915829\|emb\|CAD89231.1\| putative homing endonuclease [Thermotoga sp. RQ7] gi\|34915825, gi\|... - gi\|34915825\|emb\|CAD89229.1\| putative homing endonuclease [Thermotoga neapolitana], gi\|34915823\|emb\|C...	162.0	[0..3]	[157..1]
gi\|34915833 - gi\|34915833\|emb\|CAD89233.1\| putative homing endonuclease [Thermotoga sp. SG1]	161.0	[0..3]	[157..1]
gi\|34915819 - gi\|34915819\|emb\|CAD89226.1\| putative homing endonuclease [Thermotoga naphthophila] gi\|34915819\|emb\|... - putative homing endonuclease [Thermotoga naphthophila]	161.0	[0..3]	[157..1]
gi\|254484737, gi... - gi\|254484737\|ref\|ZP_05097953.1\| putative site-specific DNA endonuclease [Marinitoga piezophila KA3],... gi\|34915821 - gi\|34915821\|emb\|CAD89227.1\| putative homing endonuclease [Thermotoga petrophila RKU-1] gi\|34915821 - gi\|34915821\|emb\|CAD89227.1\| putative homing endonuclease [Thermotoga petrophila]	160.0	[0..3]	[157..1]
gi\|34915827 - gi\|34915827\|emb\|CAD89230.1\| putative homing endonuclease [Thermotoga sp. FjSS3-B.1]	159.0	[0..3]	[157..1]
gi\|217314585, gi... - gi\|224179542\|ref\|YP_002601069.1\| putative site-specific DNA endonuclease [Monomastix sp. OKE-1], gi\|...	156.0	[0..8]	[155..13]
gi\|12667503 - gi\|12667503\|gb\|AAG61147.1\| putative site-specific DNA endonuclease [Chlorella vulgaris]	154.0	[0..3]	[146..1]
gi\|6066151, gi\|1... - gi\|6066151\|gb\|AAF03169.1\|AF110138_1 putative site-specific DNA endonuclease [Nephroselmis olivacea],...	147.0	[0..3]	[140..1]
gi\|17028265 - gi\|17028265\|gb\|AAL34360.1\|L49148_1 putative protein [Chlamydomonas mexicana]	147.0	[0..4]	[139..4]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLHLEPWYV SGLTEGEGCF SISFNFRKKL KIGIETRPSF SITLNQRDLP LLKEIHSFFE  60
   61 CGAIRFSRGD RTYKYEVRSV KDLVKRIIPH FDNYPLRGGK QKDFRYFSEI CKKIHTNFHL 120
  121 NKQHLIEIIK MAYLMNPSGK RRHEINDLLR LLGEKMV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	2i3pA
Description:	No description for 2i3pA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits