YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29540783, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29540783, gi|....

Description	E-value	Query Range	Subject Range
gi\|15920248, gi\|... - gi\|15920248\|ref\|NP_375917.1\| 3-hydroxybutyryl-CoA dehydrogenase [Sulfolobus tokodaii str. 7], gi\|156...	215.0	[0..1]	[186..411]
gi\|70606884, gi\|... - gi\|70606884\|ref\|YP_255754.1\| 3-hydroxybutyryl-CoA dehydrogenase [Sulfolobus acidocaldarius DSM 639],...	211.0	[0..1]	[186..422]
gi\|241770103, gi... - gi\|241770103\|ref\|ZP_04767516.1\| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Sulfolobus solfataricus... gi\|25326815 - pir\|\|F90423 hypothetical protein SSO2514 [imported] - Sulfolobus solfataricus gi\|13815814, gi\|... - gi\|15899250\|ref\|NP_343855.1\| 3-hydroxyacyl-CoA dehydrogenase/enoyl CoA hydratase [Sulfolobus solfata...	211.0	[0..1]	[186..422]
gi\|20807045, gi\|... - gi\|20807045\|ref\|NP_622216.1\| 3-hydroxybutyryl-CoA dehydratase [Thermoanaerobacter tengcongensis MB4]... gi\|20807045 - gi\|20807045\|ref\|NP_622216.1\| enoyl-CoA hydratase [Thermoanaerobacter tengcongensis MB4]	206.0	[0..1]	[184..17]
gi\|28204455, gi\|... - gi\|28212012\|ref\|NP_782956.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium tetani E88], gi\|28204455\|...	206.0	[0..1]	[186..17]
gi\|110683900, gi... - gi\|110803399\|ref\|YP_699562.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens SM101], gi\|1...	206.0	[0..1]	[186..17]
gi\|18145966, gi\|... - gi\|18311283\|ref\|NP_563217.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens str. 13], gi\|... gi\|110673862, gi... - gi\|110799215\|ref\|YP_696975.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens ATCC 13124],... gi\|182625533, gi... - gi\|182625533\|ref\|ZP_02953304.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens D str. JGS... gi\|170715197, gi... - gi\|170715197\|gb\|EDT27379.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens CPE str. F4969...	206.0	[0..1]	[186..17]

Back

Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVSNDIYLN RFYNNKHHIN DKNTVDSLAD SASQTILQGQ IGVFCTGMDF TNLQPPKSRQ  60
   61 PSDNTLYIKL LHRFVTFSRI IISCVEGAVI AGGMGLVASS DLVVATSQSQ FSLSEAIWGL 120
  121 LPVCVTPYLI RRVGFQAAYR LGFTTETIDA KEAYRLQLID LLSDEPLKKF TPMSCALAVL 180
  181 IYARLKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	2iexA
Description:	No description for 2iexA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits