YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29540773, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29540773, gi|....

Description	E-value	Query Range	Subject Range
gi\|53759202, gi\|... - gi\|91776577\|ref\|YP_546333.1\| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Me...	290.0	[0..3]	[284..6]
gi\|68543123, gi\|... - gi\|68543123\|ref\|ZP_00582838.1\| Prepilin peptidase [Shewanella baltica OS155], gi\|68519167\|gb\|EAN4271...	288.0	[0..3]	[286..4]
gi\|113910144, gi... - gi\|160877166\|ref\|YP_001556482.1\| prepilin peptidase [Shewanella baltica OS195], gi\|160862688\|gb\|ABX5...	288.0	[0..3]	[286..4]
gi\|71735543, gi\|... - gi\|71735543\|ref\|YP_273100.1\| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. phaseol...	287.0	[0..1]	[285..1]
tr\|Q888U2\|Q888U2... - Type 4 prepilin-like proteins leader peptide-processing enzyme OS=Pseudomonas syringae pv. tomato (s... gi\|28868144, gi\|... - gi\|28868144\|ref\|NP_790763.1\| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato ...	286.0	[0..1]	[285..1]
gi\|24982022, gi\|... - gi\|26987368\|ref\|NP_742793.1\| prepilin peptidase [Pseudomonas putida KT2440], gi\|24982022\|gb\|AAN66257...	286.0	[0..1]	[286..1]
gi\|37680965, gi\|... - gi\|37680965\|ref\|NP_935574.1\| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio...	286.0	[0..2]	[286..16]
gi\|66044051, gi\|... - gi\|66044051\|ref\|YP_233892.1\| prepilin peptidase [Pseudomonas syringae pv. syringae B728a], gi\|632547...	286.0	[0..1]	[285..1]
gi\|82740054, gi\|... - gi\|82740054\|ref\|ZP_00902822.1\| type IV pili prepilin peptidase PilD/XcpA [Pseudomonas putida F1], gi...	285.0	[0..1]	[286..1]
gi\|69163170, gi\|... - gi\|69953987\|ref\|ZP_00640869.1\| Prepilin peptidase [Shewanella frigidimarina NCIMB 400], gi\|69163170\|...	285.0	[0..2]	[286..7]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIISFLQFH FYITIVAIAV IGLIVGSFLN VVIVRYPTLL AARWRRECQE YLNLPVEPKP  60
   61 KFNLATPRSQ CPRCKKTLKI RHNLPLISYL TLRGRCAYCH EKISPLYPIV ELLCAILSVA 120
  121 IVIRYQI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.02
Match:	2j7aC
Description:	No description for 2j7aC was found.

Predicted Domain #2

Region A:
Residues: [128-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWQALAGLLL TWVLIVLFFI DLKTQLLPDA ITLPTLWFGL SLSLFYMFVS PYQAIFGAIL  60
   61 GYGLLWITAA FYQLIRKKEG MGRGDFKMVS MLGAWFGPGI VLNVLLLSVF LGLITSFMLL 120
  121 ALKKISVKQP IPFGPFIAVA GWISLLSGPV LIHKLISYL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.251812
Match:	PF01478.9
Description:	No description for PF01478.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits