YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29653458, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29653458, gi|....

Description	E-value	Query Range	Subject Range
gi\|37199711, gi\|... - gi\|37680961\|ref\|NP_935570.1\| quinolinate phosphoribosyltransferase [Vibrio vulnificus YJ016], gi\|371...	332.0	[0..2]	[272..30]
gi\|91228624, gi\|... - gi\|91228624\|ref\|ZP_01262541.1\| nicotinate-nucleotide pyrophosphorylase [Vibrio alginolyticus 12G01],...	332.0	[0..2]	[272..18]
gi\|16930777 - gi\|16930777\|gb\|AAL32048.1\|AF439854_1 NadC [Vibrio vulnificus]	331.0	[0..2]	[272..18]
gi\|95927716, gi\|... - gi\|95927716\|ref\|ZP_01310470.1\| hypothetical protein CburR_01000480 [Coxiella burnetii RSA 331], gi\|1...	330.0	[0..1]	[274..1]
gi\|27361137, gi\|... - gi\|27364991\|ref\|NP_760519.1\| quinolinate phosphoribosyltransferase [Vibrio vulnificus CMCP6], gi\|273...	329.0	[0..2]	[272..18]
gi\|110803622, gi... - gi\|110803622\|ref\|YP_697707.1\| nicotinate-nucleotide pyrophosphorylase [Clostridium perfringens SM101...	327.0	[0..1]	[274..1]
gi\|54310287, gi\|... - gi\|54310287\|ref\|YP_131307.1\| quinolinate phosphoribosyltransferase [Photobacterium profundum SS9], g...	327.0	[0..2]	[272..38]
gi\|90438546, gi\|... - gi\|90580244\|ref\|ZP_01236051.1\| nicotinate-nucleotide pyrophosphorylase [Vibrio angustum S14], gi\|904...	327.0	[0..1]	[272..17]
gi\|32039744, gi\|... - gi\|32039744\|ref\|ZP_00138016.1\| COG0157: Nicotinate-nucleotide pyrophosphorylase [Pseudomonas aerugin...	327.0	[0..6]	[273..13]
gi\|126198042, gi... - gi\|84322942\|ref\|ZP_00971019.1\| COG0157: Nicotinate-nucleotide pyrophosphorylase [Pseudomonas aerugin...	327.0	[0..6]	[273..13]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKAIRTAV HAALVEDIGS GDITAELISA ETVARASIIS RENAIICGIP WVDEVYQAVD  60
   61 SSIKIQWKVK DGDFVSSNQA LALLTGKARS LVTGERTALN WLQTLSGTAT TVSRYVEKLK 120
  121 GTPAHLLDTR KTLPGLRYAQ KYAVRCGGGK NHRMGLYDAF LIKENHILSC GSLTQAIQKA 180
  181 RASHPEKTLE IEVENLNELQ EALAAKADII LLDNFDIDTI KKAVKINNSQ AKLEISGNVN 240
  241 LETIHEIAKT GVDYISVGAL TKHLRAIDLS MRIY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.045757
Match:	1qapA
Description:	Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain; Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nicotinate phosphoribosyltransferase activity	3.4096751090496	bayes_pls_golite062009
nicotinate-nucleotide diphosphorylase (carboxylating) activity	3.12788282156037	bayes_pls_golite062009
binding	1.58263447797054	bayes_pls_golite062009
catalytic activity	0.60409960326459	bayes_pls_golite062009
protein binding	0.502035039039958	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: