YRC Public Data Repository - Protein Structure Prediction

Protein:	UBIA_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBIA_COXBU.

Description	E-value	Query Range	Subject Range
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	223.0	[0..3]	[285..971]
gi\|71005862, gi\|... - gi\|71005862\|ref\|XP_757597.1\| hypothetical protein UM01450.1 [Ustilago maydis 521], ref\|XP_399065.1\| ...	218.0	[0..8]	[287..632]
Coq2-PA - The gene Coenzyme Q biosynthesis protein 2 is referred to in FlyBase by the symbol Dmel\Coq2 (CG9613... gi\|220949886 - gi\|220949886\|gb\|ACL87486.1\| Coq2-PA [synthetic construct]	214.0	[0..1]	[284..70]
COQ2_BOVIN - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1	213.0	[0..2]	[284..65]
UBIA_SACD2 - 4-hydroxybenzoate octaprenyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM ...	213.0	[0..4]	[285..14]
COQ2_DROPS - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=... gi\|125775189, gi... - gi\|54638587\|gb\|EAL27989.1\| GA21912 [Drosophila pseudoobscura pseudoobscura], gi\|125775189\|ref\|XP_001...	212.0	[0..9]	[284..84]
COQ2_AEDAE - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1	211.0	[0..9]	[284..117]
gi\|114593901 - gi\|114593901\|ref\|XP_526592.2\| PREDICTED: para-hydroxybenzoate-polyprenyltransferase, mitochondrial i...	211.0	[0..3]	[284..116]
gi\|115732277, gi... - gi\|115898775\|ref\|XP_792747.2\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|11...	210.0	[0..2]	[284..55]
UBIA_PSEU2 - 4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ubiA ...	209.0	[0..1]	[286..9]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINLRQQMPH YLRLMRFDKP VGIFLLLWPT LWAVWIAAKG APSFKIAVIF IAGSVVMRAA  60
   61 GCIVNDFADR HLDKHVQRTQ MRPLASGSVS VTEAMLLFAV LSLIAFTLVL LLNRLTVELA 120
  121 VIGILLALVY PFLKRFTHLP QLWLGVAFSW SIPMAFAATV GHVPAVAWLL FFAAVLWPIV 180
  181 YDTQYAMI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [189-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DREDDVKVGI KSTAILFGRY DRLMIGLLQG SVLLTFGLLG WYLRFNYWFY LGLLVALGLM  60
   61 CYQQFLIRHR KPPDCFAAFR NNNWVGFFIF LGILLTYRN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits