YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29653414, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29653414, gi|....

Description	E-value	Query Range	Subject Range
gi\|95927757, gi\|... - gi\|95927757\|ref\|ZP_01310511.1\| hypothetical protein CburR_01000521 [Coxiella burnetii RSA 331], gi\|1...	206.0	[0..18]	[249..1]
gi\|154356670, gi... - gi\|94492524\|ref\|ZP_01299731.1\| hypothetical protein CburD_01000102 [Coxiella burnetii Dugway 7E9-12]...	205.0	[0..18]	[249..1]
gi\|29654445, gi\|... - gi\|29654445\|ref\|NP_820137.1\| enhanced entry protein [Coxiella burnetii RSA 493], gi\|29541712\|gb\|AAO9... gi\|212212461, gi... - gi\|212212461\|ref\|YP_002303397.1\| enhanced entry protein [Coxiella burnetii CbuG_Q212], gi\|212010871\|...	195.0	[0..15]	[249..7]
gi\|52629958, gi\|... - gi\|52842847\|ref\|YP_096646.1\| enhanced entry protein EnhA [Legionella pneumophila subsp. pneumophila ...	176.0	[0..47]	[248..22]
gi\|54298630, gi\|... - gi\|54298630\|ref\|YP_124999.1\| enhanced entry protein EnhA [Legionella pneumophila str. Paris], gi\|537...	176.0	[0..47]	[248..22]
gi\|53755312, gi\|... - gi\|54295480\|ref\|YP_127895.1\| enhanced entry protein EnhA [Legionella pneumophila str. Lens], gi\|5375...	176.0	[0..47]	[248..22]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRGLKFRKI KGLISISMLV LLALTNSAAY GQTSPHHPDV NYEESRYYGA HLCAYSEFTC  60
   61 IAVKPGDTWT KLFPNKRERE IVKRLNRTNM ALSNRHWIVV PTELTEVEYL DLSPFPPNIH 120
  121 PTHQKLLVVN LGLHAFAAYD EKGQLVHWGP VSGGQEWCSD VGRKCNTVVG NFRIVRLGGP 180
  181 ECVSNKFPVE TEGGAPMPYC MFYFRGYALH GSTLPGYHAS HGCIRLFHDD AKWLNKHFLN 240
  241 VGTQIIVTR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	1y7mA
Description:	Crystal Structure of the B. subtilis YkuD protein at 2 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0233690850112888	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: