YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29376318, gi\|...
Organism:	Enterococcus faecalis V583
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29376318, gi|....

Description	E-value	Query Range	Subject Range
gi\|16801721 - gi\|16801721\|ref\|NP_471989.1\| hypothetical protein lin2660 [Listeria innocua Clip11262] gi\|25303440, gi\|... - pir\|\|AF1764 conserved hypothetical protein homolog lin2660 [imported] - Listeria innocua (strain Cli...	259.0	[0..1]	[211..1]
gi\|46908688, gi\|... - gi\|46908688\|ref\|YP_015077.1\| hypothetical protein LMOf2365_2489 [Listeria monocytogenes str. 4b F236... gi\|225877526, gi... - gi\|226225064\|ref\|YP_002759171.1\| hypothetical protein Lm4b_02485 [Listeria monocytogenes Clip81459],... gi\|254993055 - gi\|254993055\|ref\|ZP_05275245.1\| hypothetical protein LmonocytoFSL_08461 [Listeria monocytogenes FSL ... gi\|254879158 - gi\|254879158\|ref\|ZP_05251868.1\| hypothetical protein LmonFSL_08177 [Listeria monocytogenes FSL J2-07... gi\|254853955 - gi\|254853955\|ref\|ZP_05243303.1\| hypothetical protein LmonoFSL_11884 [Listeria monocytogenes FSL R2-5... gi\|254825361 - gi\|254825361\|ref\|ZP_05230362.1\| hypothetical protein LmonFS_09362 [Listeria monocytogenes FSL J1-194... gi\|153168622, gi... - gi\|153168622\|ref\|ZP_01928445.1\| conserved hypothetical protein [Listeria monocytogenes FSL N1-017], ... gi\|254932242, gi... - gi\|254932242\|ref\|ZP_05265601.1\| hypothetical protein LmonH_07419 [Listeria monocytogenes HPB2262], g...	255.0	[0..1]	[211..1]
gi\|224503243 - gi\|224503243\|ref\|ZP_03671550.1\| hypothetical protein LmonFR_12133 [Listeria monocytogenes FSL R2-561... gi\|25303439, gi\|... - pir\|\|AD1389 conserved hypothetical proteins homolog lmo2516 [imported] - Listeria monocytogenes (str... gi\|16804554 - gi\|16804554\|ref\|NP_466039.1\| hypothetical protein lmo2516 [Listeria monocytogenes EGD-e]	253.0	[0..1]	[211..1]
gi\|152977406, gi... - gi\|89201180\|ref\|ZP_01179926.1\| Protein of unknown function UPF0029 [Bacillus cereus subsp. cytotoxis...	251.0	[0..1]	[210..1]
gi\|228855938, gi... - gi\|228903670\|ref\|ZP_04067790.1\| IMPACT family member yvyE [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|228848687, gi... - gi\|228911032\|ref\|ZP_04074840.1\| IMPACT family member yvyE [Bacillus thuringiensis IBL 200], gi\|22884... gi\|228961435, gi... - gi\|228961435\|ref\|ZP_04123048.1\| IMPACT family member yvyE [Bacillus thuringiensis serovar pakistani ... gi\|75759037, gi\|... - gi\|75759037\|ref\|ZP_00739145.1\| Hypothetical protein RBTH_03569 [Bacillus thuringiensis serovar israe... gi\|228791389, gi... - gi\|228968312\|ref\|ZP_04129309.1\| IMPACT family member yvyE [Bacillus thuringiensis serovar sotto str.... gi\|228722515, gi... - gi\|229050859\|ref\|ZP_04194411.1\| IMPACT family member yvyE [Bacillus cereus AH676], gi\|228722515\|gb\|E... gi\|228670986, gi... - gi\|229112606\|ref\|ZP_04242143.1\| IMPACT family member yvyE [Bacillus cereus Rock1-15], gi\|228670986\|g... gi\|228652783, gi... - gi\|229130444\|ref\|ZP_04259400.1\| IMPACT family member yvyE [Bacillus cereus BDRD-Cer4], gi\|228652783\|... gi\|229147728, gi... - gi\|229147728\|ref\|ZP_04276071.1\| IMPACT family member yvyE [Bacillus cereus BDRD-ST24], gi\|228635741\|... gi\|218161230, gi... - gi\|218233273\|ref\|YP_002369973.1\| conserved hypothetical protein TIGR00257 [Bacillus cereus B4264], g... gi\|30023232, gi\|... - gi\|30023232\|ref\|NP_834863.1\| Xaa-Pro dipeptidase [Bacillus cereus ATCC 14579], gi\|29898792\|gb\|AAP120...	251.0	[0..1]	[210..1]
gi\|56310545 - gi\|56310545\|emb\|CAE82203.1\| hypothetical protein [Bacillus licheniformis]	251.0	[0..1]	[212..1]
gi\|163942881, gi... - gi\|89205062\|ref\|ZP_01183635.1\| Protein of unknown function UPF0029 [Bacillus weihenstephanensis KBAB...	251.0	[0..1]	[207..1]
gi\|52349977, gi\|... - gi\|52787475\|ref\|YP_093304.1\| YvyE [Bacillus licheniformis ATCC 14580], gi\|52349977\|gb\|AAU42611.1\| Yv...	251.0	[0..1]	[212..1]
gi\|25303432 - pir\|\|F84103 hypothetical protein BH3630 [imported] - Bacillus halodurans (strain C-125) gi\|10176254, gi\|... - gi\|15616192\|ref\|NP_244497.1\| hypothetical protein BH3630 [Bacillus halodurans C-125], gi\|10176254\|db...	250.0	[0..1]	[213..1]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLESYITVKQ DGFSEIEIKK SRFICSVKRV TSEEEAKAFI AAIKKEHWKA NHNCSAFVIG  60
   61 EKNDIQRSSD DGEPSGTAGV PMLEVLKKKE LINVVAVVTR YFGGIKLGTG GLIRAYSHAL 120
  121 SHTLDEIGLV IGKLQQELLI TIAYPLLGKA QAFLEHSPYT LKETIYTESI QLICLVDEQA 180
  181 TETFIAEMTD LLNGQLTIEK GATSYHELPF NEKGAQANDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.522879
Match:	1vi7A
Description:	Crystal structure of an hypothetical protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits