YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29343653, gi\|...
Organism:	Enterococcus faecalis V583
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29343653, gi|....

Description	E-value	Query Range	Subject Range
gi\|28211790, gi\|... - gi\|28211790\|ref\|NP_782734.1\| ethanolamine utilization protein eutS [Clostridium tetani E88], gi\|2820...	188.0	[0..1]	[115..4]
gi\|47091944, gi\|... - gi\|47091944\|ref\|ZP_00229738.1\| propanediol utilization protein PduU [Listeria monocytogenes str. 4b ... gi\|254823602 - gi\|254823602\|ref\|ZP_05228603.1\| PduU protein [Listeria monocytogenes FSL J1-194] gi\|25341011, gi\|... - pir\|\|AC1571 Salmonelle enterica PduU protein homolog lin1108 [imported] - Listeria innocua (strain C... gi\|225876207, gi... - gi\|226223745\|ref\|YP_002757852.1\| PduU protein [Listeria monocytogenes Clip81459], gi\|225876207\|emb\|C... gi\|133727578, gi... - gi\|153166472\|ref\|ZP_01927042.1\| propanediol utilization protein PduU [Listeria monocytogenes FSL N1-... gi\|46907361, gi\|... - gi\|46907361\|ref\|YP_013750.1\| propanediol utilization protein PduU [Listeria monocytogenes str. 4b F2... gi\|254932976, gi... - gi\|254932976\|ref\|ZP_05266335.1\| PduU protein [Listeria monocytogenes HPB2262], gi\|153201854\|ref\|ZP_0... gi\|16800177 - gi\|16800177\|ref\|NP_470445.1\| hypothetical protein lin1108 [Listeria innocua Clip11262] gi\|255521697 - gi\|255521697\|ref\|ZP_05388934.1\| PduU protein [Listeria monocytogenes FSL J1-175] gi\|254993049 - gi\|254993049\|ref\|ZP_05275239.1\| PduU protein [Listeria monocytogenes FSL J2-064] gi\|254878482 - gi\|254878482\|ref\|ZP_05251192.1\| PduU protein [Listeria monocytogenes FSL J2-071] gi\|254852984 - gi\|254852984\|ref\|ZP_05242332.1\| PduU protein [Listeria monocytogenes FSL R2-503]	184.0	[0..2]	[115..5]
gi\|126699518, gi... - gi\|126699518\|ref\|YP_001088415.1\| putative ethanolamine/propanediol utilization protein [Clostridium ... gi\|255306898 - gi\|255306898\|ref\|ZP_05351069.1\| putative ethanolamine/propanediol utilization protein [Clostridium d... gi\|255101034 - gi\|255101034\|ref\|ZP_05330011.1\| putative ethanolamine/propanediol utilization protein [Clostridium d...	184.0	[0..2]	[115..4]
gi\|153174212, gi... - gi\|254828503\|ref\|ZP_05233190.1\| hypothetical protein LmonocytogeFSL_08589 [Listeria monocytogenes FS... gi\|153179234, gi... - gi\|254936141\|ref\|ZP_05267838.1\| hypothetical protein LmonF6_03390 [Listeria monocytogenes F6900], gi... gi\|255026162 - gi\|255026162\|ref\|ZP_05298148.1\| hypothetical protein LmonocytFSL_07070 [Listeria monocytogenes FSL J... gi\|47016603, gi\|... - gi\|47094985\|ref\|ZP_00232598.1\| propanediol utilization protein PduU [Listeria monocytogenes str. 1/2... gi\|16803184 - gi\|16803184\|ref\|NP_464669.1\| hypothetical protein lmo1144 [Listeria monocytogenes EGD-e] gi\|224500758 - gi\|224500758\|ref\|ZP_03669107.1\| hypothetical protein LmonF1_14226 [Listeria monocytogenes Finland 19... gi\|224502560 - gi\|224502560\|ref\|ZP_03670867.1\| hypothetical protein LmonFR_08574 [Listeria monocytogenes FSL R2-561... gi\|16410560, gi\|... - pir\|\|AH1217 Salmonelle enterica PduU protein homolog lmo1144 [imported] - Listeria monocytogenes (st... gi\|153184693, gi... - gi\|254898695\|ref\|ZP_05258619.1\| hypothetical protein LmonJ_02730 [Listeria monocytogenes J0161], gi\|... gi\|153195920, gi... - gi\|254830102\|ref\|ZP_05234757.1\| hypothetical protein Lmon1_02035 [Listeria monocytogenes 10403S], gi... gi\|254911816, gi... - gi\|254911816\|ref\|ZP_05261828.1\| hypothetical protein LmonJ2_03390 [Listeria monocytogenes J2818], gi...	183.0	[0..2]	[115..5]
gi\|15802984, gi\|... - gi\|15802984\|ref\|NP_289014.1\| hypothetical protein Z3718 [Escherichia coli O157:H7 EDL933], gi\|125168... gi\|110806395, gi... - gi\|110806395\|ref\|YP_689915.1\| hypothetical protein SFV_2506 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|157161921, gi... - gi\|157161921\|ref\|YP_001459239.1\| ethanolamine utilization protein EutS [Escherichia coli HS], gi\|157... gi\|13362794 - gi\|13362794\|dbj\|BAB36747.1\| hypothetical protein [Escherichia coli O157:H7] gi\|157079218, gi... - gi\|157157188\|ref\|YP_001463782.1\| ethanolamine utilization protein EutS [Escherichia coli E24377A], g... gi\|188487676, gi... - gi\|188492477\|ref\|ZP_02999747.1\| bacterial microcompartments protein family [Escherichia coli 53638],... gi\|209763860, gi... - pir\|\|E65021 hypothetical protein b2462 - Escherichia coli (strain K-12), pir\|\|G85888 hypothetical pr... gi\|26109235, gi\|... - gi\|26248829\|ref\|NP_754869.1\| ethanolamine utilization protein eutS [Escherichia coli CFT073], gi\|261... gi\|24052873, gi\|... - gi\|24113791\|ref\|NP_708301.1\| hypothetical protein SF2504 [Shigella flexneri 2a str. 301], gi\|2405287... gi\|49176225, gi\|... - gi\|49176225\|ref\|NP_416957.3\| putative carboxysome structural protein, ethanol utilization [Escherich... gi\|30063842, gi\|... - gi\|30063842\|ref\|NP_838013.1\| hypothetical protein S2655 [Shigella flexneri 2a str. 2457T], gi\|300420... gi\|13362794 - gi\|13362794\|dbj\|BAB36747.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai]	182.0	[0..1]	[115..24]
gi\|177909755, gi... - gi\|182624958\|ref\|ZP_02952736.1\| ethanolamine utilization protein EutS [Clostridium perfringens D str... gi\|169296913, gi... - gi\|169346854\|ref\|ZP_02865802.1\| ethanolamine utilization protein EutS [Clostridium perfringens C str... gi\|182381966, gi... - gi\|182381966\|gb\|EDT79445.1\| ethanolamine utilization protein EutS [Clostridium perfringens NCTC 8239... gi\|170712669, gi... - gi\|170712669\|gb\|EDT24851.1\| ethanolamine utilization protein EutS [Clostridium perfringens B str. AT... gi\|18144553, gi\|... - gi\|18309875\|ref\|NP_561809.1\| propanediol utilization protein [Clostridium perfringens str. 13], gi\|1... gi\|110675898, gi... - gi\|110801251\|ref\|YP_695335.1\| ethanolamine utilization protein EutS [Clostridium perfringens ATCC 13... gi\|168204919, gi... - gi\|170663452\|gb\|EDT16135.1\| ethanolamine utilization protein EutS [Clostridium perfringens E str. JG...	182.0	[0..2]	[115..4]
gi\|91211791, gi\|... - gi\|91211791\|ref\|YP_541777.1\| ethanolamine utilization protein EutS [Escherichia coli UTI89], gi\|9107... gi\|226901342, gi... - gi\|237704976\|ref\|ZP_04535457.1\| ethanolamine utilization protein EutS [Escherichia sp. 3_2_53FAA], g...	181.0	[0..1]	[115..24]
gi\|90574512, gi\|... - gi\|90574512\|ref\|ZP_01231009.1\| hypothetical protein CdifQ_02002026 [Clostridium difficile QCD-32g58]...	181.0	[0..2]	[109..4]
gi\|82544911, gi\|... - gi\|82544911\|ref\|YP_408858.1\| hypothetical protein SBO_2477 [Shigella boydii Sb227], gi\|81246322\|gb\|A...	180.0	[0..1]	[115..24]
gi\|197215305, gi... - gi\|197251602\|ref\|YP_002147012.1\| propanediol utilization protein PduU [Salmonella enterica subsp. en... gi\|197243905, gi... - gi\|197265650\|ref\|ZP_03165724.1\| propanediol utilization protein PduU [Salmonella enterica subsp. ent... gi\|197361967, gi... - gi\|197361967\|ref\|YP_002141604.1\| putative propanediol utilization protein PduU [Salmonella enterica ... gi\|205272979, gi... - gi\|205353198\|ref\|YP_002226999.1\| putative propanediol utilization protein PduU [Salmonella enterica ... gi\|168242121, gi... - gi\|205338561\|gb\|EDZ25325.1\| propanediol utilization protein PduU [Salmonella enterica subsp. enteric... gi\|168259649, gi... - gi\|205350937\|gb\|EDZ37568.1\| propanediol utilization protein PduU [Salmonella enterica subsp. enteric... gi\|195631212, gi... - gi\|195631212\|gb\|EDX49772.1\| propanediol utilization protein PduU [Salmonella enterica subsp. enteric... gi\|194410027, gi... - gi\|194451723\|ref\|YP_002046103.1\| propanediol utilization protein PduU [Salmonella enterica subsp. en... gi\|205322315, gi... - gi\|205322315\|gb\|EDZ10154.1\| propanediol utilization protein PduU [Salmonella enterica subsp. enteric... gi\|205330525, gi... - gi\|205330525\|gb\|EDZ17289.1\| propanediol utilization protein PduU [Salmonella enterica subsp. enteric... gi\|213649052 - gi\|213649052\|ref\|ZP_03379105.1\| putative propanediol utilization protein PduU [Salmonella enterica s... gi\|213850294 - gi\|213850294\|ref\|ZP_03381192.1\| putative propanediol utilization protein PduU [Salmonella enterica s... gi\|214001067 - gi\|214001067\|ref\|ZP_03411802.1\| putative propanediol utilization protein PduU [Salmonella enterica s... gi\|206709293, gi... - gi\|207857490\|ref\|YP_002244141.1\| putative propanediol utilization protein PduU [Salmonella enterica ... gi\|213052540 - gi\|213052540\|ref\|ZP_03345418.1\| putative propanediol utilization protein PduU [Salmonella enterica s... lcl\|NC_016856.1_... - [gene=pduU] [protein=polyhedral body protein] [protein_id=YP_005238085.1] [location=2182200..2182550... gi\|213425582 - gi\|213425582\|ref\|ZP_03358332.1\| putative propanediol utilization protein PduU [Salmonella enterica s... gi\|213615923 - gi\|213615923\|ref\|ZP_03371749.1\| putative propanediol utilization protein PduU [Salmonella enterica s... gi\|16760987 - gi\|16760987\|ref\|NP_456604.1\| putative propanediol utilization protein PduU [Salmonella enterica subs... PDUU_SALTY - Propanediol utilization protein pduU OS=Salmonella typhimurium GN=pduU PE=1 SV=1 gi\|56127300, gi\|... - gi\|56413043\|ref\|YP_150118.1\| putative propanediol utilization protein PduU [Salmonella enterica subs... PDUU_SALTI - Propanediol utilization protein pduU OS=Salmonella typhi GN=pduU PE=2 SV=1 PDUU_SALTY - Propanediol utilization protein PduU OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)... gi\|29141317, gi\|... - gi\|29141317\|ref\|NP_804659.1\| putative propanediol utilization protein PduU [Salmonella enterica subs... PDUU_SALTY - Propanediol utilization protein PduU OS=Salmonella typhimurium GN=pduU PE=1 SV=1 PDUU_SALTI - Propanediol utilization protein PduU OS=Salmonella typhi GN=pduU PE=2 SV=1	179.0	[0..5]	[115..8]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKQRMIQE YVPGKQVTLA HIIASPNKEI YTKLGLPEGT SNALGILTIT PSEAAIIAVD  60
   61 IATKSGDIQI GFIDRFSGSV VISGDVSSVE AALQAVIEGL QQILNFSVTC KITRT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.57
Match:	2ewhA
Description:	No description for 2ewhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits