| Protein: | HGNC:6296|MIM:60... |
| Organism: | SPECIES UNKNOWN |
| Length: | 872 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HGNC:6296|MIM:60....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..872] | [1..872] |
|
|
0.0 | [1..872] | [1..870] |
|
Region A: Residues: [1-366] |
1 11 21 31 41 51
| | | | | |
1 MVQKSRNGGV YPGPSGEKKL KVGFVGLDPG APDSTRDGAL LIAGSEAPKR GSILSKPRAG 60
61 GAGAGKPPKR NAFYRKLQNF LYNVLERPRG WAFIYHAYVF LLVFSCLVLS VFSTIKEYEK 120
121 SSEGALYILE IVTIVVFGVE YFVRIWAAGC CCRYRGWRGR LKFARKPFCV IDIMVLIASI 180
181 AVLAAGSQGN VFATSALRSL RFLQILRMIR MDRRGGTWKL LGSVVYAHSK ELVTAWYIGF 240
241 LCLILASFLV YLAEKGENDH FDTYADALWW GLITLTTIGY GDKYPQTWNG RLLAATFTLI 300
301 GVSFFALPAG ILGSGFALKV QEQHRQKHFE KRRNPAAGLI QSAWRFYATN LSRTDLHSTW 360
361 QYYERT
|
| Detection Method: |  |
| Confidence: | 57.522879 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [367-517] |
1 11 21 31 41 51
| | | | | |
1 VTVPMYSSQT QTYGASRLIP PLNQLELLRN LKSKSGLAFR KDPPPEPSPS KGSPCRGPLC 60
61 GCCPGRSSQK VSLKDRVFSS PRGVAAKGKG SPQAQTVRRS PSADQSLEDS PSKVPKSWSF 120
121 GDRSRARQAF RIKGAASRQN SEEASLPGED I
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 1lnqA |
| Description: | Potassium channel-related protein MthK |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [518-707] |
1 11 21 31 41 51
| | | | | |
1 VDDKSCPCEF VTEDLTPGLK VSIRAVCVMR FLVSKRKFKE SLRPYDVMDV IEQYSAGHLD 60
61 MLSRIKSLQS RVDQIVGRGP AITDKDRTKG PAEAELPEDP SMMGRLGKVE KQVLSMEKKL 120
121 DFLVNIYMQR MGIPPTETEA YFGAKEPEPA PPYHSPEDSR EHVDRHGCIV KIVRSSSSTG 180
181 QKNFSAPPAA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [708-872] |
1 11 21 31 41 51
| | | | | |
1 PPVQCPPSTS WQPQSHPRQG HGTSPVGDHG SLVRIPPPPA HERSLSAYGG GNRASMEFLR 60
61 QEDTPGCRPP EGNLRDSDTS ISIPSVDHEE LERSFSGFSI SQSKENLDAL NSCYAAVAPC 120
121 AKVRPYIAEG ESDTDSDLCT PCGPPPRSAT GEGPFGDVGW AGPRK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
