YRC Public Data Repository - Protein Structure Prediction

Protein:	HGNC:1938\|MIM:61...
Organism:	SPECIES UNKNOWN
Length:	395 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HGNC:1938|MIM:61....

Description	E-value	Query Range	Subject Range
gi\|114687091, gi... - gi\|114687093\|ref\|XP_001144556.1\| PREDICTED: choline/ethanolamine kinase isoform 3 [Pan troglodytes],...	3.0E-96	[1..395]	[1..395]
gi\|33304029 - gi\|33304029\|gb\|AAQ02522.1\| choline kinase-like [synthetic construct]	5.0E-96	[1..395]	[1..395]
gi\|73968807 - gi\|73968807\|ref\|XP_848257.1\| PREDICTED: similar to Choline/ethanolamine kinase isoform 1 [Canis fami...	1.0E-90	[1..395]	[1..395]
gi\|76617233 - gi\|76617233\|ref\|XP_616335.2\| PREDICTED: similar to Choline/ethanolamine kinase isoform 1 [Bos taurus...	9.0E-86	[1..395]	[1..395]
CHKB_MOUSE - Choline/ethanolamine kinase OS=Mus musculus GN=Chkb PE=1 SV=3	3.0E-83	[18..394]	[18..394]
CHKB_RAT - Choline/ethanolamine kinase OS=Rattus norvegicus GN=Chkb PE=1 SV=3	9.0E-78	[18..393]	[18..393]
gi\|47078278 - gi\|47078278\|ref\|NP_997634.1\| choline kinase alpha isoform b [Homo sapiens]	9.0E-75	[37..388]	[80..437]

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Predicted Domain #1

Region A:
Residues: [1-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAEATAVAG SGAVGGCLAK DGLQQSKCPD TTPKRRRASS LSRDAERRAY QWCREYLGGA  60
   61 WRRVQPEELR VYPVSGGLSN LLFRCSLPDH LPSVGEEPRE VLLRLYGAIL QGVDSLVLES 120
  121 VMFAILAERS LGPQLYGVFP EGRLEQYIPS RPLKTQELRE PVLSAAIATK MAQFHGMEMP 180
  181 FTKEPHWLFG TMERYLKQIQ DLPPTGLPEM NLLEMYSLKD EMGNLRKLLE STPSPVVFCH 240
  241 NDIQEGNILL LSEPENADSL MLVDFEYSSY NYRGFDIGNH FCEWVYDYTH EEWPFYKARP 300
  301 TDYPTQEQQL HFIRHYLAEA KKGETLSQEE QRKLEEDLLV EVSRYALASH FFWGLWSILQ 360
  361 ASMSTIEFGY LDYAQSRFQF YFQQKGQLTS VHSSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.221849
Match:	2ig7A
Description:	No description for 2ig7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits