YRC Public Data Repository - Protein Structure Prediction

Protein:	HGNC:1310\|Ensemb...
Organism:	SPECIES UNKNOWN
Length:	407 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HGNC:1310|Ensemb....

Description	E-value	Query Range	Subject Range
gi\|31455561 - gi\|31455561\|dbj\|BAC77406.1\| putative MAPK activating protein [Homo sapiens]	0.0	[1..407]	[1..407]
T184B_BOVIN - Transmembrane protein 184B OS=Bos taurus GN=TMEM184B PE=2 SV=1	0.0	[1..407]	[1..407]
gi\|109094178, gi... - gi\|109094180\|ref\|XP_001093546.1\| PREDICTED: chromosome 22 open reading frame 5 isoform 2 [Macaca mul...	0.0	[1..407]	[1..407]
gi\|73969645 - gi\|73969645\|ref\|XP_538375.2\| PREDICTED: similar to Putative MAP kinase-activating protein C22orf5 [C...	0.0	[1..407]	[1..407]
gi\|109482563, gi... - gi\|109482563\|ref\|XP_001076493.1\| PREDICTED: similar to Putative MAP kinase-activating protein C22orf...	0.0	[1..407]	[65..478]
T184B_MOUSE - Transmembrane protein 184B OS=Mus musculus GN=Tmem184b PE=2 SV=1	0.0	[1..407]	[1..407]
gi\|60099007, gi\|... - gi\|71896895\|ref\|NP_001025930.1\| transmembrane protein 184B [Gallus gallus], gi\|60099007\|emb\|CAH65334...	0.0	[1..407]	[1..410]
gi\|46250096, gi\|... - gi\|46250096\|gb\|AAH68743.1\| MGC81233 protein [Xenopus laevis], gi\|147906659\|ref\|NP_001084583.1\| hypot...	0.0	[9..407]	[3..403]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVRGDVLAP DPASPTTAAA SPSVSVIPEG SPTAMEQPVF LMTTAAQAIS GFFVWTALLI  60
   61 TCHQIYMHLR CYSCPNEQRY IVRILFIVPI YAFDSWLSLL FFTNDQYYVY FGTVRDCYEA 120
  121 LVIYNFLSLC YEYL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [135-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGESSIMSEI RGKPIESSCM YGTCCLWGKT YSIGFLRFCK QATLQFCVVK PLMAVSTVVL  60
   61 QAFGKYRDGD FDVTSGYLYV TIIYNISVSL ALYALFLFYF ATRELLSPYS PVLKFFMVKS 120
  121 VIFLSFWQGM LLAILEKCGA IPKIHSARVS VGEGTVAAGY QDFIICVEMF FAALALRHAF 180
  181 TYKVYADKRL DAQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [328-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRCAPMKSIS SSLKETMNPH DIVQDAIHNF SPAYQQYTQQ STLEPGPTWR GGAHGLSRSH  60
   61 SLSGARDNEK TLLLSSDDEF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits