YRC Public Data Repository - Protein Structure Prediction

Protein:	HGNC:1309\|Ensemb...
Organism:	SPECIES UNKNOWN
Length:	517 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HGNC:1309|Ensemb....

Description	E-value	Query Range	Subject Range
gi\|114686951 - gi\|114686951\|ref\|XP_515210.2\| PREDICTED: TBC1 domain family, member 22A isoform 2 [Pan troglodytes]	0.0	[1..517]	[1..517]
gi\|55732667 - gi\|55732667\|emb\|CAH93032.1\| hypothetical protein [Pongo abelii] gi\|197097752 - gi\|197097752\|ref\|NP_001126793.1\| TBC1 domain family, member 22A [Pongo abelii]	0.0	[1..517]	[1..517]
gi\|37589908 - gi\|37589908\|gb\|AAH01292.2\| TBC1 domain family, member 22A [Homo sapiens]	0.0	[1..517]	[1..517]
TB22A_MOUSE - TBC1 domain family member 22A OS=Mus musculus GN=Tbc1d22a PE=1 SV=3	0.0	[1..517]	[1..516]
gi\|73968889 - gi\|73968889\|ref\|XP_848590.1\| PREDICTED: similar to TBC1 domain family, member 22A isoform 2 [Canis f...	0.0	[1..517]	[1..517]
gi\|115496465, gi... - gi\|92097460\|gb\|AAI14651.1\| TBC1 domain family, member 22A [Bos taurus], gi\|115496465\|ref\|NP_00106998...	0.0	[1..517]	[1..515]
TB22A_MACFA - TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis GN=TBC1D22A PE=2 SV=2	0.0	[21..517]	[1..497]
gi\|71895599, gi\|... - gi\|71895599\|ref\|NP_001026661.1\| TBC1 domain family, member 22A [Gallus gallus], gi\|53127354\|emb\|CAG3...	0.0	[1..517]	[1..518]

Back

Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASDGARKQF WKRSNSKLPG SIQHVYGAQH PPFDPLLHGT LLRSTAKMPT TPVKAKRVST  60
   61 FQEFESNTSD AWDAGEDDDE LLAMAAESLN SEVVMETANR VLRNHSQRQG RPTLQEGPGL 120
  121 QQKPRPEAEP PSPPSGDLRL VKSVSESHTS CPAESASDAA PLQRSQSLPH SATVTLGGTS 180
  181 DPSTLSSSAL SEREA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [196-517]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRLDKFKQLL AGPNTDLEEL RRLSWSGIPK PVRPMTWKLL SGYLPANVDR RPATLQRKQK  60
   61 EYFAFIEHYY DSRNDEVHQD TYRQIHIDIP RMSPEALILQ PKVTEIFERI LFIWAIRHPA 120
  121 SGYVQGINDL VTPFFVVFIC EYIEAEEVDT VDVSGVPAEV LCNIEADTYW CMSKLLDGIQ 180
  181 DNYTFAQPGI QMKVKMLEEL VSRIDEQVHR HLDQHEVRYL QFAFRWMNNL LMREVPLRCT 240
  241 IRLWDTYQSE PDGFSHFHLY VCAAFLVRWR KEILEEKDFQ ELLLFLQNLP TAHWDDEDIS 300
  301 LLLAEAYRLK FAFADAPNHY KK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.221849
Match:	2qfzA
Description:	No description for 2qfzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits