YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11282246, gi\|...
Organism:	Chlamydia muridarum
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11282246, gi|....

Description	E-value	Query Range	Subject Range
gi\|76167738, gi\|... - gi\|76789208\|ref\|YP_328294.1\| hypothetical protein CTA_0518 [Chlamydia trachomatis A/HAR-13], gi\|7616... gi\|255311285 - gi\|255311285\|ref\|ZP_05353855.1\| hypothetical protein Ctra62_02470 [Chlamydia trachomatis 6276] gi\|255317587 - gi\|255317587\|ref\|ZP_05358833.1\| hypothetical protein Ctra6_02465 [Chlamydia trachomatis 6276s] gi\|15605199, gi\|... - gi\|3328907\|gb\|AAC68072.1\| hypothetical protein CT_472 [Chlamydia trachomatis D/UW-3/CX], gi\|15605199... gi\|7468737, gi\|2... - pir\|\|E71509 hypothetical protein CT472 - Chlamydia trachomatis (serotype D, strain UW3/Cx), gi\|23780... gi\|237802900, gi... - gi\|237802900\|ref\|YP_002888094.1\| hypothetical protein JALI_4741 [Chlamydia trachomatis], gi\|23127413...	323.0	[0..1]	[264..1]
gi\|45190603, gi\|... - gi\|45190603\|ref\|NP_984857.1\| AEL004Wp [Ashbya gossypii ATCC 10895], gi\|44983582\|gb\|AAS52681.1\| AEL00... gi\|44983582 - gi\|44983582\|gb\|AAS52681.1\| AEL004Wp [Ashbya gossypii ATCC 10895]	318.0	[0..2]	[264..174]
gi\|29834265, gi\|... - gi\|29839918\|ref\|NP_829024.1\| hypothetical protein CCA00150 [Chlamydophila caviae GPIC], gi\|29834265\|...	318.0	[0..1]	[264..1]
gi\|62147860, gi\|... - gi\|62184793\|ref\|YP_219578.1\| hypothetical protein CAB148 [Chlamydophila abortus S26/3], gi\|62147860\|...	316.0	[0..1]	[264..1]
gi\|89898664, gi\|... - gi\|89898664\|ref\|YP_515774.1\| hypothetical protein CF0857 [Chlamydophila felis Fe/C-56], gi\|89332036\|...	311.0	[0..1]	[264..1]
RMD1_YEAST - Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 RMD1 - Cytoplasmic protein required for sporulation gi\|190405021 - gi\|190405021\|gb\|EDV08288.1\| sporulation protein RMD1 [Saccharomyces cerevisiae RM11-1a] gi\|207346870 - gi\|207346870\|gb\|EDZ73232.1\| YDL001Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151941989 - gi\|151941989\|gb\|EDN60345.1\| protein required for maturation and assembly of cytochrome oxidase subun...	306.0	[0..2]	[264..129]
gi\|116207758, gi... - gi\|88183769\|gb\|EAQ91237.1\| hypothetical protein CHGG_03172 [Chaetomium globosum CBS 148.51], gi\|1162...	296.0	[0..36]	[263..290]
gi\|49646393, gi\|... - gi\|50545980\|ref\|XP_500527.1\| YALI0B05390p [Yarrowia lipolytica], gi\|49646393\|emb\|CAG82758.1\| unnamed... gi\|49646393 - gi\|49646393\|emb\|CAG82758.1\| YALI0B05390p [Yarrowia lipolytica]	295.0	[0..2]	[263..113]
gi\|46445975, gi\|... - gi\|46445975\|ref\|YP_007340.1\| hypothetical protein pc0341 [Candidatus Protochlamydia amoebophila UWE2...	295.0	[0..1]	[264..4]
gi\|46124763, gi\|... - gi\|46124763\|ref\|XP_386935.1\| hypothetical protein FG06759.1 [Gibberella zeae PH-1], gi\|42554226\|gb\|E...	293.0	[0..37]	[263..291]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCSAYCSAS SYHLHVLFHL LKARYPSVLS REYVLISSEE LNESDKAAVF FPFGVSVFWG  60
   61 WEEAEELQVI QAITSASVDP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPNPEIDSYD FHYGEKLQIR RDRLVLTNSN LNTKLAISFG LAQSIKLTVF EETIYKTVEN  60
   61 SKSLPQELAS KGKISLSRKT IAKKIGELFL DKASVNLHSD ILDEPDFFWE HPETQPFYID 120
  121 VLTCLDVNAR VNVLNHRLAI LGDVLEILND QLNHQHSSAL EWTVIWLIAL EVLVTLLKDV 180
  181 FNII

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits