YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29143912, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	607 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29143912, gi|....

Description	E-value	Query Range	Subject Range
gi\|113890647, gi... - gi\|78691128\|ref\|ZP_00855757.1\| Small GTP-binding protein domain:GTP-binding protein TypA [Shewanella... gi\|82495546, gi\|... - gi\|82495546\|ref\|ZP_00881121.1\| Small GTP-binding protein domain:GTP-binding protein TypA [Shewanella...	0.0	[1..602]	[1..602]
gi\|127514481, gi... - gi\|78365939\|ref\|ZP_00836222.1\| Small GTP-binding protein domain:GTP-binding protein TypA [Shewanella...	0.0	[1..606]	[1..606]
gi\|78506315, gi\|... - gi\|78686000\|ref\|ZP_00850773.1\| Small GTP-binding protein domain:GTP-binding protein TypA [Shewanella...	0.0	[1..602]	[1..602]
TYPA_ECO27 - GTP-binding protein typA/bipA OS=Escherichia coli O127:H6 GN=typA PE=3 SV=1 EG11837 - GTP-binding protein / GTPase, regulatory, ribosome-associated TYPA_ECOL6 - GTP-binding protein TypA/BipA OS=Escherichia coli O6 GN=typA PE=3 SV=1 TYPA_ECOLI - GTP-binding protein typA/BipA (Tyrosine phosphorylated protein A) - Escherichia coli gi\|91213417, gi\|... - gi\|91213417\|ref\|YP_543403.1\| GTP-binding protein [Escherichia coli UTI89], gi\|91074991\|gb\|ABE09872.1... gi\|13364269, gi\|... - gi\|15834047\|ref\|NP_312820.1\| GTP-binding protein [Escherichia coli O157:H7 str. Sakai], gi\|13364269\|... gi\|110644211, gi... - gi\|110644211\|ref\|YP_671941.1\| GTP-binding protein [Escherichia coli 536], gi\|110345803\|gb\|ABG72040.1... gi\|208729123, gi... - gi\|208809322\|ref\|ZP_03251659.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|195937509 - gi\|195937509\|ref\|ZP_03082891.1\| GTP-binding protein [Escherichia coli O157:H7 str. EC4024] gi\|208819085, gi... - gi\|208819085\|ref\|ZP_03259405.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|208734610, gi... - gi\|208813333\|ref\|ZP_03254662.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|209921345, gi... - gi\|209921345\|ref\|YP_002295429.1\| GTP-binding protein [Escherichia coli SE11], gi\|209914604\|dbj\|BAG79... gi\|209159566, gi... - gi\|209398166\|ref\|YP_002273387.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4115], gi... gi\|217321483, gi... - gi\|217325262\|ref\|ZP_03441346.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. TW14588], gi... TYPA_ECO27 - GTP-binding protein TypA/BipA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=typA PE=3 SV=1 gi\|168775308, gi... - gi\|187769216\|gb\|EDU33060.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|168768160, gi... - gi\|189362590\|gb\|EDU81009.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|189373257, gi... - gi\|189373257\|gb\|EDU91673.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|189001563, gi... - gi\|189001563\|gb\|EDU70549.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|169757043, gi... - gi\|170022115\|ref\|YP_001727069.1\| GTP-binding protein [Escherichia coli ATCC 8739], gi\|169757043\|gb\|A... gi\|168799563, gi... - gi\|189378025\|gb\|EDU96441.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC508], gi\|16879... gi\|170521357, gi... - gi\|170683639\|ref\|YP_001746201.1\| GTP-binding protein TypA [Escherichia coli SMS-3-5], gi\|170521357\|g... gi\|170083343, gi... - gi\|170083343\|ref\|YP_001732663.1\| GTP-binding protein [Escherichia coli str. K-12 substr. DH10B], gi\|... gi\|75237836, gi\|... - gi\|75237836\|ref\|ZP_00721851.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|191166444, gi... - gi\|75230391\|ref\|ZP_00716877.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|75210112, gi\|... - gi\|75210112\|ref\|ZP_00710291.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|157069023, gi... - gi\|75197746\|ref\|ZP_00707816.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|75188605, gi\|... - gi\|75188605\|ref\|ZP_00701872.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|227885392, gi... - gi\|227885392\|ref\|ZP_04003197.1\| GTP-binding protein [Escherichia coli 83972], gi\|227837650\|gb\|EEJ481... gi\|218363200, gi... - gi\|218556431\|ref\|YP_002389345.1\| GTP-binding protein [Escherichia coli IAI1], gi\|218363200\|emb\|CAR00... gi\|226902840, gi... - gi\|237702903\|ref\|ZP_04533384.1\| GTP-binding protein TypA/BipA [Escherichia sp. 3_2_53FAA], gi\|226902... gi\|218358681, gi... - gi\|218551140\|ref\|YP_002384931.1\| GTP-binding protein [Escherichia fergusonii ATCC 35469], gi\|2183586... gi\|238902938, gi... - gi\|238902938\|ref\|YP_002928734.1\| GTP-binding protein [Escherichia coli BW2952], gi\|238861393\|gb\|ACR6... gi\|24054436, gi\|... - gi\|24115159\|ref\|NP_709669.1\| GTP-binding protein [Shigella flexneri 2a str. 301], gi\|24054436\|gb\|AAN... gi\|218692158, gi... - gi\|218692158\|ref\|YP_002400370.1\| GTP-binding protein [Escherichia coli ED1a], gi\|218429722\|emb\|CAR10... gi\|251787135, gi... - gi\|251787135\|ref\|YP_003001439.1\| hypothetical protein B21_03705 [Escherichia coli BL21], gi\|24237940... TYPA_SHIFL - GTP-binding protein TypA/BipA OS=Shigella flexneri GN=typA PE=3 SV=1 gi\|85676188, gi\|... - gi\|89110157\|ref\|AP_003937.1\| GTP-binding protein [Escherichia coli str. K-12 substr. W3110], gi\|8567... gi\|218367715, gi... - gi\|218560946\|ref\|YP_002393859.1\| GTP-binding protein [Escherichia coli S88], gi\|218367715\|emb\|CAR055... gi\|253775493, gi... - gi\|254290572\|ref\|YP_003056320.1\| GTP-binding protein [Escherichia coli BL21(DE3)], gi\|253979879\|gb\|A... TYPA_ECO57 - GTP-binding protein TypA/BipA OS=Escherichia coli O157:H7 GN=typA PE=3 SV=1 gi\|81243103, gi\|... - gi\|82778955\|ref\|YP_405304.1\| GTP-binding protein [Shigella dysenteriae Sd197], gi\|81243103\|gb\|ABB638... gi\|218371416, gi... - gi\|218701430\|ref\|YP_002409059.1\| GTP-binding protein [Escherichia coli IAI39], gi\|218371416\|emb\|CAR1... gi\|253975723, gi... - gi\|254163822\|ref\|YP_003046930.1\| GTP-binding protein [Escherichia coli B str. REL606], gi\|253975723\|... TYPA_ECOL6 - GTP-binding protein TypA/BipA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=typA... gi\|188496233, gi... - gi\|75513980\|ref\|ZP_00736333.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|218697585, gi... - gi\|218697585\|ref\|YP_002405252.1\| GTP-binding protein [Escherichia coli 55989], gi\|218354317\|emb\|CAV0... gi\|254595264, gi... - gi\|254795864\|ref\|YP_003080701.1\| GTP-binding protein [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|12518753, gi\|... - gi\|15804456\|ref\|NP_290496.1\| GTP-binding protein [Escherichia coli O157:H7 EDL933], gi\|12518753\|gb\|A... gi\|192929361, gi... - gi\|75258147\|ref\|ZP_00729608.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... EG11837 - GTP-binding protein / GTPase, regulatory, ribosome-associated gi\|193067998, gi... - gi\|75238313\|ref\|ZP_00722312.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche... gi\|218707497, gi... - gi\|218707497\|ref\|YP_002415016.1\| GTP-binding protein [Escherichia coli UMN026], gi\|218434594\|emb\|CAR... gi\|188016741, gi... - gi\|188016741\|gb\|EDU54863.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|168761758, gi... - gi\|189367898\|gb\|EDU86314.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|168755543, gi... - gi\|189357181\|gb\|EDU75600.1\| GTP-binding protein TypA [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|115515268, gi... - gi\|117626144\|ref\|YP_859467.1\| GTP-binding protein [Escherichia coli APEC O1], gi\|115515268\|gb\|ABJ033... gi\|124501236, gi... - gi\|124527534\|ref\|ZP_01698999.1\| GTP-binding protein TypA [Escherichia coli B], gi\|124501236\|gb\|EAY48...	0.0	[1..607]	[1..607]
gi\|30043100, gi\|... - gi\|30064840\|ref\|NP_839011.1\| GTP-binding protein [Shigella flexneri 2a str. 2457T], gi\|30043100\|gb\|A...	0.0	[1..607]	[1..607]
gi\|194435177, gi... - gi\|83568945\|ref\|ZP_00920411.1\| COG1217: Predicted membrane GTPase involved in stress response [Shige...	0.0	[1..607]	[1..607]
gi\|187429977, gi... - gi\|75176744\|ref\|ZP_00696872.1\| COG1217: Predicted membrane GTPase involved in stress response [Shige... gi\|82546215, gi\|... - gi\|82546215\|ref\|YP_410162.1\| GTP-binding protein [Shigella boydii Sb227], gi\|81247626\|gb\|ABB68334.1\|...	0.0	[1..606]	[1..606]
gi\|83586280, gi\|... - gi\|83586280\|ref\|ZP_00924916.1\| COG1217: Predicted membrane GTPase involved in stress response [Esche...	0.0	[1..606]	[1..606]
gi\|62182470, gi\|... - gi\|62182470\|ref\|YP_218887.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Choler... gi\|197251595, gi... - gi\|197251595\|ref\|YP_002148927.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serov... gi\|238912152 - gi\|238912152\|ref\|ZP_04655989.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Ten... gi\|194456130, gi... - gi\|194469766\|ref\|ZP_03075750.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serova... gi\|205341844, gi... - gi\|205341844\|gb\|EDZ28608.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar We... gi\|195630129, gi... - gi\|195630129\|gb\|EDX48769.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar Ne... gi\|205332778, gi... - gi\|205332778\|gb\|EDZ19542.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar Ke... gi\|205323663, gi... - gi\|205323663\|gb\|EDZ11502.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar Sa... gi\|161617132, gi... - gi\|161617132\|ref\|YP_001591097.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Pa...	0.0	[1..607]	[1..607]
gi\|205348302, gi... - gi\|205348302\|gb\|EDZ34933.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar Ha... gi\|194443181, gi... - gi\|194443181\|ref\|YP_002043230.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serov... gi\|194451908, gi... - gi\|194451908\|ref\|YP_002048011.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar He... gi\|194711909, gi... - gi\|194736407\|ref\|YP_002116928.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serov... gi\|168237624, gi... - gi\|197289403\|gb\|EDY28768.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar Sc... gi\|205336867, gi... - gi\|205336867\|gb\|EDZ23631.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serovar He... gi\|16762424 - gi\|16762424\|ref\|NP_458041.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typhi ... gi\|16504728, gi\|... - pir\|\|AH0949 GTP-binding protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (stra... gi\|11024578 - gi\|11024578\|emb\|CAC14268.1\| BipA GTPase [Salmonella enterica] gi\|56415855, gi\|... - gi\|56415855\|ref\|YP_152930.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Paraty... gi\|213426416 - gi\|213426416\|ref\|ZP_03359166.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typ... gi\|213616219 - gi\|213616219\|ref\|ZP_03372045.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typ... gi\|213852016 - gi\|213852016\|ref\|ZP_03381548.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typ... gi\|214002898 - gi\|214002898\|ref\|ZP_03413633.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typ... gi\|205354409, gi... - gi\|205354409\|ref\|YP_002228210.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Ga... gi\|207859200, gi... - gi\|207859200\|ref\|YP_002245851.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar En... gi\|213027497 - gi\|213027497\|ref\|ZP_03341944.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typ... gi\|213162860 - gi\|213162860\|ref\|ZP_03348570.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Typ... gi\|197096262, gi... - gi\|197364785\|ref\|YP_002144422.1\| GTP-binding protein [Salmonella enterica subsp. enterica serovar Pa... gi\|198242119, gi... - gi\|198242119\|ref\|YP_002217929.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serov... gi\|200388210, gi... - gi\|200388210\|ref\|ZP_03214822.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serova... gi\|204930278, gi... - gi\|204930278\|ref\|ZP_03221255.1\| GTP-binding protein TypA [Salmonella enterica subsp. enterica serova...	0.0	[1..607]	[1..607]

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Predicted Domain #1

Region A:
Residues: [1-607]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIENLRNIAI IAHVDHGKTT LVDKLLQQSG TFDARAETQE RVMDSNDLEK ERGITILAKN  60
   61 TAIKWNDYRI NIVDTPGHAD FGGEVERVMS MVDSVLLVVD AFDGPMPQTR FVTKKAFAHG 120
  121 LKPIVVINKV DRPGARPDWV VDQVFDLFVN LDATDEQLDF PIIYASALNG IAGLDHEDMA 180
  181 EDMTPLYQAI VDHVPAPDVD LDGPLQMQIS QLDYNNYVGV IGIGRIKRGK VKPNQQVTII 240
  241 DSEGKTRNAK VGKVLTHLGL ERIDSDIAEA GDIIAITGLG ELNISDTICD PQNVEALPAL 300
  301 SVDEPTVSMF FCVNTSSFCG KEGKFVTSRQ ILDRLNKELV HNVALRVEET EDADAFRVSG 360
  361 RGELHLSVLI ENMRREGFEL AVSRPKVIFR EIDGRKQEPY ENVTLDVEEQ HQGSVMQALG 420
  421 ERKGDLKNMN PDGKGRVRLD YVIPSRGLIG FRSEFMTMTS GTGLLYSTFS HYDDIRPGEV 480
  481 GQRQNGVLIS NGQGKAVAFA LFGLQDRGKL FLGHGAEVYE GQIIGIHSRS NDLTVNCLTG 540
  541 KKLTNMRASG TDEAVILVPP IKMSLEQALE FIDDDELVEV TPTSIRIRKR HLTENDRRRA 600
  601 NRGQKEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.39794
Match:	1fnmA
Description:	Elongation factor G (EF-G), domain II; Elongation factor G (EF-G), N-terminal (G) domain; Elongation factor G (EF-G), domain IV; Elongation factor G (EF-G)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits