YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29141091, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	317 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29141091, gi|....

Description	E-value	Query Range	Subject Range
gi\|25512758, gi\|... - gi\|25512758\|pir\|\|AF0792 conserved hypothetical protein STY2517 [imported] - Salmonella enterica subs... gi\|16761214 - gi\|16761214\|ref\|NP_456831.1\| deubiquitinase [Salmonella enterica subsp. enterica serovar Typhi str. ...	0.0	[1..317]	[1..317]
gi\|16765614, gi\|... - gi\|16765614\|ref\|NP_461229.1\| deubiquitinase [Salmonella typhimurium LT2], gi\|16420826\|gb\|AAL21188.1\|... lcl\|NC_016856.1_... - [gene=sseL] [protein=deubiquitinase] [protein_id=YP_005238360.1] [location=2446348..2447301]	0.0	[1..317]	[1..317]
gi\|197361748, gi... - gi\|197361748\|ref\|YP_002141384.1\| deubiquitinase [Salmonella enterica subsp. enterica serovar Paratyp... gi\|56412815, gi\|... - gi\|56412815\|ref\|YP_149890.1\| deubiquitinase [Salmonella enterica subsp. enterica serovar Paratyphi A...	0.0	[1..317]	[1..317]
SSEL_SALCH - Deubiquitinase sseL OS=Salmonella choleraesuis GN=sseL PE=3 SV=1 SSEL_SALCH - Deubiquitinase SseL OS=Salmonella choleraesuis (strain SC-B67) GN=sseL PE=3 SV=1 SSEL_SALCH - Deubiquitinase sseL OS=Salmonella choleraesuis GN=sseL PE=3 SV=1	0.0	[1..317]	[24..340]
gi\|1381662 - gi\|1381662\|gb\|AAB02733.1\| hypothetical 46 kD protein	0.0	[1..308]	[27..363]
gi\|7466311 - gi\|7466311\|pir\|\|C64998 hypothetical protein b2269 - Escherichia coli (strain K-12) EG14261 - protease, capable of cleaving an AMC-ubiquitin model substrate / Protease, capable of cleaving an AM... gi\|169889722, gi... - gi\|170081887\|ref\|YP_001731207.1\| hypothetical protein ECDH10B_2431 [Escherichia coli str. K-12 subst... gi\|238901444, gi... - gi\|238901444\|ref\|YP_002927240.1\| putative enzyme [Escherichia coli BW2952], gi\|238862355\|gb\|ACR64353... gi\|89109087, gi\|... - gi\|89109087\|ref\|AP_002867.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG14261 - protease, capable of cleaving an AMC-ubiquitin model substrate / Protease, capable of cleaving an AM...	0.0	[1..308]	[27..363]
gi\|195935650 - gi\|195935650\|ref\|ZP_03081032.1\| deubiquitinase [Escherichia coli O157:H7 str. EC4024] ELAD_ECO57 - Protease ElaD OS=Escherichia coli O157:H7 GN=elaD PE=3 SV=1 gi\|25358983, gi\|... - pir\|\|F85867 probable sulfatase/phosphatase elaD [imported] - Escherichia coli (strain O157:H7, subst... gi\|254593565, gi... - gi\|254794165\|ref\|YP_003079002.1\| predicted enzyme [Escherichia coli O157:H7 str. TW14359], gi\|254593... gi\|15802820, gi\|... - gi\|15802820\|ref\|NP_288847.1\| deubiquitinase [Escherichia coli O157:H7 EDL933], gi\|12516620\|gb\|AAG574... gi\|13362627, gi\|... - gi\|15832411\|ref\|NP_311184.1\| deubiquitinase [Escherichia coli O157:H7 str. Sakai], gi\|13362627\|dbj\|B...	0.0	[1..308]	[27..367]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEALALLF SAVENGDQNC IDLLCNLALR NDNLGHRVEK FLFDLFSGKR SGSPDIDKKI  60
   61 NQACLVLHQI ANND

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITKDNTEWKK LHAPSRLLYM AGSATTDLSK KIGIAHKIMG DQFAQTDQEQ VGVENLWCSA  60
   61 RMLSSDELAA ATLGLVQESP LLSVNYPIGL IHPTTKENIL RTQLLEKMAQ SGLSENEVFL 120
  121 INTGDHWLIC LFYKLAEKIK CLIFNTYHDL NENTKQEIIE AAKIAGISEN EDIDFIETNL 180
  181 QNNVPNGCGL FCYHTIQLLS NAGQNDPATT LREFAENFLT LSVEEQTLFN TQTRRQIYEY 240
  241 SLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.17
Match:	1euvA
Description:	Ulp1 protease C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits