YRC Public Data Repository - Protein Structure Prediction

Protein:	sp\|B7UQ15\|IRAM_ECO27
Organism:	Escherichia coli O127:H6
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sp|B7UQ15|IRAM_ECO27.

Description	E-value	Query Range	Subject Range
gi\|24415897 - gi\|24415897\|gb\|AAN59922.1\| unknown [Bacteriophage LC159] gi\|209447168, gi... - gi\|209447168\|ref\|YP_002274253.1\| hypothetical protein Stx2-1717_gp43 [Stx2-converting phage 1717], g... gi\|195940161 - gi\|195940161\|ref\|ZP_03085543.1\| hypothetical protein EscherichcoliO157_27844 [Escherichia coli O157:... gi\|9955640, gi\|2... - gi\|9955640\|emb\|CAC05542.1\| hypothetical protein [Escherichia coli], gi\|209514844\|gb\|ACI49765.1\| cons...	192.0	[0..1]	[107..1]
gi\|85674854, gi\|... - gi\|89108005\|ref\|AP_001785.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG13885 - RpoS stabilzer during Mg starvation, anti-RssB factor / RpoS stabilzer during Mg starvation, anti-Rs... EG13885 - RpoS stabilzer during Mg starvation, anti-RssB factor / RpoS stabilzer during Mg starvation, anti-Rs... gi\|170020470, gi... - gi\|170020470\|ref\|YP_001725424.1\| hypothetical protein EcolC_2466 [Escherichia coli ATCC 8739], gi\|16... IRAM_ECODH - Anti-adapter protein IraM OS=Escherichia coli (strain K12 / DH10B) GN=iraM PE=3 SV=1 ELBA_ECOLI - Enhancing lycopene biosynthesis protein 1 - Escherichia coli IRAM_ECOBW - Anti-adapter protein IraM OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=iraM PE=3 SV=1	186.0	[0..1]	[107..1]
IRAM_SHIDS - Anti-adapter protein IraM OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=iraM PE=3 SV=1	179.0	[0..1]	[107..1]
IRAM_SHISS - Anti-adapter protein IraM OS=Shigella sonnei (strain Ss046) GN=iraM PE=3 SV=1	177.0	[0..1]	[107..1]
IRAM_SALTY - Anti-adapter protein iraM OS=Salmonella typhimurium GN=iraM PE=1 SV=1 IRAM_SALTY - Anti-adapter protein IraM OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=iraM PE... IRAM_SALTY - Anti-adapter protein iraM OS=Salmonella typhimurium GN=iraM PE=1 SV=1	172.0	[0..1]	[108..1]
IRAM_SALPA - Anti-adapter protein iraM OS=Salmonella paratyphi A GN=iraM PE=3 SV=1 IRAM_SALCH - Anti-adapter protein iraM OS=Salmonella choleraesuis GN=iraM PE=3 SV=1 gi\|224468911, gi... - gi\|224584384\|ref\|YP_002638182.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|214003485 - gi\|214003485\|ref\|ZP_03414220.1\| hypothetical protein Salmonellentericaenterica_25891 [Salmonella ent... gi\|213975458 - gi\|213975458\|ref\|ZP_03402717.1\| hypothetical protein Salmonellaentericaenterica_13207 [Salmonella en... gi\|213854697 - gi\|213854697\|ref\|ZP_03382937.1\| hypothetical protein SentesT_11609 [Salmonella enterica subsp. enter... gi\|213649784 - gi\|213649784\|ref\|ZP_03379837.1\| hypothetical protein SentesTy_22384 [Salmonella enterica subsp. ente... IRAM_SALCH - Anti-adapter protein iraM OS=Salmonella choleraesuis GN=iraM PE=3 SV=1 gi\|213612632 - gi\|213612632\|ref\|ZP_03370458.1\| hypothetical protein SentesTyp_09054 [Salmonella enterica subsp. ent... gi\|213580293 - gi\|213580293\|ref\|ZP_03362119.1\| hypothetical protein SentesTyph_03380 [Salmonella enterica subsp. en... gi\|213428518 - gi\|213428518\|ref\|ZP_03361268.1\| hypothetical protein SentesTyphi_25092 [Salmonella enterica subsp. e... gi\|213420329 - gi\|213420329\|ref\|ZP_03353395.1\| hypothetical protein Salmonentericaenterica_22275 [Salmonella enteri... gi\|213052397 - gi\|213052397\|ref\|ZP_03345275.1\| hypothetical protein Salmoneentericaenterica_05379 [Salmonella enter... gi\|207856453, gi... - gi\|207856453\|ref\|YP_002243104.1\| hypothetical protein SEN0974 [Salmonella enterica subsp. enterica s... gi\|197362820, gi... - gi\|197362820\|ref\|YP_002142457.1\| hypothetical protein SSPA1617 [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=STM14_1261] [protein=hypothetical protein] [protein_id=YP_005236849.1] [location=complement(11... IRAM_SALCH - Anti-adapter protein IraM OS=Salmonella choleraesuis (strain SC-B67) GN=iraM PE=3 SV=1 IRAM_SALPA - Anti-adapter protein IraM OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=iraM PE=3 SV=1 gi\|238911068 - gi\|238911068\|ref\|ZP_04654905.1\| hypothetical protein SentesTe_08022 [Salmonella enterica subsp. ente...	170.0	[0..1]	[108..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWIVIDTVI QPSCGISFSV IWSKIKLIIW YQSDAFLPPE SIFTLTHTGI MLNNKVLPVT  60
   61 IYNVVPFNKT FWNLIKNSQE CPTNTDNVLN ECFNNRCTLQ ICPYGLKQQS P

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.547	d.58.7	RNA-binding domain, RBD
View	Download	0.376	d.58.7	RNA-binding domain, RBD
View	Download	0.376	d.58.7	RNA-binding domain, RBD
View	Download	0.350	b.33.1	ISP domain
View	Download	0.349	d.58.7	RNA-binding domain, RBD
View	Download	0.345	d.58.7	RNA-binding domain, RBD
View	Download	0.285	d.58.7	RNA-binding domain, RBD
View	Download	0.256	d.58.7	RNA-binding domain, RBD
View	Download	0.244	d.58.7	RNA-binding domain, RBD
View	Download	0.215	b.33.1	ISP domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits