YRC Public Data Repository - Protein Structure Prediction

Protein:	Y230_SYNY3
Organism:	Synechocystis sp. PCC 6803 substr. Kazusa
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y230_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|32470856, gi\|... - gi\|32470856\|ref\|NP_863849.1\| hypothetical protein RB339 [Rhodopirellula baltica SH 1], gi\|32443001\|e...	138.0	[0..21]	[117..1]
gi\|78700337, gi\|... - gi\|78700337\|ref\|ZP_00864794.1\| Protein of unknown function DUF77 [Alkalilimnicola ehrlichei MLHE-1],...	138.0	[0..21]	[118..1]
gi\|39996662, gi\|... - gi\|39996662\|ref\|NP_952613.1\| hypothetical protein GSU1562 [Geobacter sulfurreducens PCA], gi\|3998354...	135.0	[0..21]	[118..1]
gi\|89083722, gi\|... - gi\|89091987\|ref\|ZP_01164942.1\| hypothetical protein MED92_07466 [Oceanospirillum sp. MED92], gi\|8908...	133.0	[0..21]	[120..1]
gi\|116071043, gi... - gi\|116071043\|ref\|ZP_01468312.1\| hypothetical protein BL107_15395 [Synechococcus sp. BL107], gi\|11606...	132.0	[0..21]	[118..1]
gi\|78184310, gi\|... - gi\|78184310\|ref\|YP_376745.1\| hypothetical protein Syncc9902_0733 [Synechococcus sp. CC9902], gi\|7816...	132.0	[0..21]	[118..1]
gi\|91797642, gi\|... - gi\|92114552\|ref\|YP_574480.1\| hypothetical protein Csal_2434 [Chromohalobacter salexigens DSM 3043], ...	132.0	[0..21]	[121..1]
gi\|25489859 - pir\|\|E83829 hypothetical protein BH1437 [imported] - Bacillus halodurans (strain C-125) gi\|10174054, gi\|... - gi\|15614000\|ref\|NP_242303.1\| hypothetical protein BH1437 [Bacillus halodurans C-125], gi\|10174054\|db...	130.0	[0..24]	[119..254]
gi\|116073086, gi... - gi\|116073086\|ref\|ZP_01470348.1\| hypothetical protein RS9916_31587 [Synechococcus sp. RS9916], gi\|116...	130.0	[0..21]	[120..1]
gi\|78213450, gi\|... - gi\|78213450\|ref\|YP_382229.1\| hypothetical protein Syncc9605_1933 [Synechococcus sp. CC9605], gi\|7819...	130.0	[0..21]	[120..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCQNLGKFEI VVSHYRRVKA MNVIVDLCVV PLGVGVSVGQ YVAACQKVLA EAGLKHTMHA  60
   61 YGTNIEGDWD EVFAAVKACH EAVHALGAPR ITSSMRFGTR TDRPQTMDEK VKSVETWLEN 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.09691
Match:	1lxjA
Description:	Hypothetical protein YB1001C
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits