YRC Public Data Repository - Protein Structure Prediction

Protein:	SYL_SYNY3
Organism:	Synechocystis sp. PCC 6803 substr. Kazusa
Length:	869 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYL_SYNY3.

Description	E-value	Query Range	Subject Range
SYL_SYNE7 - Leucine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=leuS PE=3 SV=1	772.0	[0..2]	[868..18]
SYL_SYNP6 - Leucine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=leuS PE=3 ...	769.0	[0..2]	[868..18]
SYL_SYNEL - Leucyl-tRNA synthetase OS=Synechococcus elongatus GN=leuS PE=3 SV=1 SYL_THEEB - Leucine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=leuS PE=3 SV=1	768.0	[0..1]	[868..1]
SYL_ANAVT - Leucine--tRNA ligase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=leuS PE=3 SV=1	763.0	[0..1]	[868..1]
gi\|25292983 - pir\|\|AD2216 leucyl-tRNA synthetase [imported] - Nostoc sp. (strain PCC 7120) SYL_NOSS1 - Leucine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=leuS PE=3 SV=1	762.0	[0..1]	[868..1]
gi\|82714711, gi\|... - gi\|82738215\|ref\|ZP_00901052.1\| Leucyl-tRNA synthetase bacterial/mitochondrial, class Ia [Pseudomonas...	750.0	[0..1]	[867..39]
SYL_SYNPX - Leucine--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=leuS PE=3 SV=1	747.0	[0..1]	[867..1]
SYL_PELCD - Leucine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=leuS PE=3 SV=1	745.0	[0..1]	[869..1]
SYL_NOSP7 - Leucine--tRNA ligase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=leuS PE=3 SV=1	744.0	[0..1]	[869..1]
gi\|67855466, gi\|... - gi\|67922684\|ref\|ZP_00516188.1\| Leucyl-tRNA synthetase bacterial/mitochondrial, class Ia [Crocosphaer...	744.0	[0..1]	[868..1]

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Predicted Domain #1

Region A:
Residues: [1-869]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPYNAGEI EQKWQQRWAE WGLDKTPIAS DLPKFYALSM FPYPSGNLHM GHVRNYTITD  60
   61 VIARLKRMQG YQVLHPMGWD AFGLPAENAA IERGIPPKQW TEKNIAQMRA QLQQLGLSID 120
  121 WEREVATCAP DYYRWTQWLF LEFFQAGLAY QKEATVNWDP IDQTVLANEQ VDSEGRSWRS 180
  181 GAMVERKLLR QWFLKITDYA EALLNDLEQL TGWPERVKLM QSHWIGKSVG AYLEFPIKDS 240
  241 QEKIAVFTTR PDTVYGVTYV VLAPEHPLTK VVTTAEQQGT VDEFVAMVAK ESEIERTAED 300
  301 KPKRGVKTGG IAINPFNGEE IPILIADYVL YEYGTGAVMG VPAHDQRDFK FAQDNNLPMQ 360
  361 VVIIPDDADN SDVNLTVAYT EAGVMVNSAQ FTGMASPKAK QAIIKFAEDN DYGRAKVQYR 420
  421 LRDWLISRQR YWGCPIPIIH CDDCGAVPVP TKDLPVELPD NVEFSGRGPS PLAKLEDWIN 480
  481 VPCPSCGKPA RRETDTMDTF IDSSWYFLRY ADAQNTELPF DGEKVAHWLP VDQYVGGIEH 540
  541 AILHLLYSRF FTKVLADRQL IPVKEPFQKL LTQGMVQGIT YKNPTTGKYV PAKDLQTGQQ 600
  601 VIDPKDPKDP DSGEPLQVFY EKMSKSKFNG VDPQEVLAKY GADTARMFIL FKAPPEKDLE 660
  661 WDDADVEGQF RFLNRVWRLV TDYIGDPAGI RFAVRPETLV TNEPLTKAEK DLRRAIHGAI 720
  721 KEVAEDLNDD YQFNTAISEM MKLSNALIAA TDLISFPVYQ EGIETLLLLL APFAPHLTEE 780
  781 LWHRLGRTDS IHQQAWLQVD PTALVLDEIT LVIQVLGKTR GTITVPASAD KTQLEELARN 840
  841 SDLAQRYLEG KTIKKVIVVP GKLVNFVIT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1h3nA
Description:	Leucyl-tRNA synthetase (LeuRS)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits