YRC Public Data Repository - Protein Structure Prediction

Protein:	PPK_SYNY3
Organism:	Synechocystis sp. PCC 6803 substr. Kazusa
Length:	728 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPK_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|17132726, gi\|... - gi\|17231085\|ref\|NP_487633.1\| polyphosphate kinase [Nostoc sp. PCC 7120], gi\|17132726\|dbj\|BAB75292.1\|... gi\|25345242 - pir\|\|AB2255 polyphosphate kinase [imported] - Nostoc sp. (strain PCC 7120)	1159.0	[0..1]	[719..1]
gi\|67920515, gi\|... - gi\|67920515\|ref\|ZP_00514035.1\| Polyphosphate kinase [Crocosphaera watsonii WH 8501], gi\|67857999\|gb\|...	1159.0	[0..1]	[720..1]
gi\|186685803, gi... - gi\|53688188\|ref\|ZP_00109608.2\| COG0855: Polyphosphate kinase [Nostoc punctiforme PCC 73102], gi\|1866...	1152.0	[0..1]	[719..1]
gi\|75909372, gi\|... - gi\|75909372\|ref\|YP_323668.1\| polyphosphate kinase [Anabaena variabilis ATCC 29413], gi\|75703097\|gb\|A...	1152.0	[0..1]	[719..1]
gi\|71676721, gi\|... - gi\|71676721\|ref\|ZP_00674461.1\| Polyphosphate kinase [Trichodesmium erythraeum IMS101], gi\|71669898\|g...	1102.0	[0..2]	[713..4]
gi\|22293934, gi\|... - gi\|22297757\|ref\|NP_681004.1\| polyphosphate kinase [Thermosynechococcus elongatus BP-1], gi\|22293934\|...	1088.0	[0..1]	[718..14]
PPK_SYNEL - Polyphosphate kinase OS=Synechococcus elongatus GN=ppk PE=3 SV=2 PPK_THEEB - Polyphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ppk PE=3 SV=2	1086.0	[0..1]	[718..1]
gi\|81300375, gi\|... - gi\|81300375\|ref\|YP_400583.1\| polyphosphate kinase [Synechococcus elongatus PCC 7942], gi\|81169256\|gb...	1082.0	[0..11]	[716..22]
gi\|56684992, gi\|... - gi\|56750033\|ref\|YP_170734.1\| polyphosphate kinase [Synechococcus elongatus PCC 6301], gi\|56684992\|db...	1079.0	[0..11]	[716..22]
gi\|86607098, gi\|... - gi\|86607098\|ref\|YP_475861.1\| polyphosphate kinase [Synechococcus sp. JA-3-3Ab], gi\|86555640\|gb\|ABD00... gi\|86607098 - gi\|86607098\|ref\|YP_475861.1\| polyphosphate kinase [Cyanobacteria bacterium Yellowstone A-Prime]	1068.0	[0..16]	[717..2]

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Predicted Domain #1

Region A:
Residues: [1-728]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQAMPSAPT VDFKDPAYYF NRELSWLAFN QRVLHEGLDD RTPLLERLKF LAIFCSNLDE  60
   61 FFMVRVAGLK QQVEANVTKL TADGRTPSQQ LKEISKSLRP LVYQQNQVFE YVLKEKLADE 120
  121 GIFLNDYVDL SQEERQYLHQ FYDDHIFPVL TPLAVDPSHP FPYISNLSLN LGVVVRDPDT 180
  181 DEELFARVKV PPTLPRFVAL PEDVCQPDPN KPWLWTGVPL EQVIAHNLAS LFPGMIIQEC 240
  241 HLFRVTRNAD IAVEEDEADD LLLAIEEELR KRRVGKSAVR LEINASTPKN IRDRLMTDLG 300
  301 LEEIDVYDID GLLGLKDLFF FLSLPAPHLK DEPWASVIPP RLKHVYEFVD GDEDGRVQQE 360
  361 GIDIFTLIRQ GDILVHHPYQ SFTASVQQFI TQAAYDPHVL TIKMTLYRTS GDSPIVNALI 420
  421 AAAENGKQVA VLVELKARFD EENNINWARK LEQYGVHVVY GLVGLKTHTK TVLVVRQEGP 480
  481 DIRRYVHIGT GNYNPKTAKL YTDLGLITCR PELGNDLTNL FNFLTGYSRQ KDYQKLLVAP 540
  541 VNMRERMVAM IEREADHCLN GGTGRIVAKM NSLVDTQIIR ALYAASQAGV QIDLIVRGIC 600
  601 CLRPGVENVS ENIRVISVIG RLLEHSRIFY FHNGGEEEIY IGSADWMSRN LTRRVEAVVP 660
  661 VEQPDLKQEL QSILGILLAD NRQAWELQPD GTYVQRRPAS PEQSQSSQAI FTAQAIAETT 720
  721 EDPELRSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1xdoA
Description:	Crystal Structure of Escherichia coli Polyphosphate Kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
polyphosphate kinase activity	13.7847593568932	bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor	4.58273206368885	bayes_pls_golite062009
kinase activity	2.73303197279191	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.40455487067749	bayes_pls_golite062009
transferase activity	1.58515858118724	bayes_pls_golite062009
catalytic activity	1.29236214516383	bayes_pls_golite062009
binding	0.86210568043471	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.62416665753063	bayes_pls_golite062009
protein binding	0.361096900521699	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: