YRC Public Data Repository - Protein Structure Prediction

Protein:	MURI_SYNY3
Organism:	Synechocystis sp. PCC 6803 substr. Kazusa
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MURI_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|25291677 - pir\|\|AF1818 glutamate racemase [imported] - Nostoc sp. (strain PCC 7120) MURI_NOSS1 - Glutamate racemase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=murI PE=3 SV=1	299.0	[0..3]	[263..18]
MURI_ANAVT - Glutamate racemase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=murI PE=3 SV=1	299.0	[0..3]	[263..18]
gi\|186682253, gi... - gi\|23125873\|ref\|ZP_00107790.1\| COG0796: Glutamate racemase [Nostoc punctiforme PCC 73102], gi\|186682...	299.0	[0..3]	[262..18]
gi\|38174839, gi\|... - gi\|38174839\|emb\|CAD70220.1\| glutamate racemase [Microcystis aeruginosa PCC 7806], gi\|159027640\|emb\|C... gi\|38174839 - gi\|38174839\|emb\|CAD70220.1\| glutamate racemase [Microcystis aeruginosa PCC 7806]	297.0	[0..1]	[267..1]
gi\|67921667, gi\|... - gi\|67921667\|ref\|ZP_00515185.1\| Glutamate racemase [Crocosphaera watsonii WH 8501], gi\|67856779\|gb\|EA...	293.0	[0..1]	[266..1]
gi\|22294182, gi\|... - gi\|22298004\|ref\|NP_681251.1\| glutamate racemase [Thermosynechococcus elongatus BP-1], gi\|22294182\|db...	291.0	[0..9]	[277..17]
gi\|56686710, gi\|... - gi\|56751751\|ref\|YP_172452.1\| glutamate racemase [Synechococcus elongatus PCC 6301], gi\|56686710\|dbj\|... gi\|81170051, gi\|... - gi\|81301170\|ref\|YP_401378.1\| glutamate racemase [Synechococcus elongatus PCC 7942], gi\|81170051\|gb\|A...	290.0	[0..7]	[268..14]
gi\|69246346, gi\|... - gi\|69246346\|ref\|ZP_00603902.1\| Glutamate racemase [Enterococcus faecium DO], gi\|68195299\|gb\|EAN09750...	286.0	[0..2]	[264..7]
gi\|50590267, gi\|... - gi\|81177085\|ref\|ZP_00875979.1\| Glutamate racemase [Streptococcus suis 89/1591], gi\|80976216\|gb\|EAP39...	286.0	[0..4]	[264..1]
gi\|86556398, gi\|... - gi\|86607856\|ref\|YP_476618.1\| glutamate racemase [Synechococcus sp. JA-2-3B'a(2-13)], gi\|86556398\|gb\|... gi\|86607856 - gi\|86607856\|ref\|YP_476618.1\| glutamate racemase [Cyanobacteria bacterium Yellowstone B-Prime]	285.0	[0..8]	[266..14]

Back

Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREPQRSRIG VFDSGVGGLT VLRELYRQLP KESILYFGDT ARLPYGKRSP QVILQYVREI  60
   61 LTWMAAEEVK MVIMACNTSS ALALETVQQE FNMPILGVIL PGARAAVRQG RRIGVISTPA 120
  121 TAASNAYRHA IHEITPDALV WQMACPEFVP LIEQNRLHDP YTLEVAKGYL QPLLDADIDT 180
  181 LVFGCTHYRH LTPVFQQILP SHIRLVDPAS HVVKAARQEL EVMGLRNSEM SIATRFTVSG 240
  241 CPQQFAELSH QWLGFTPMVE KISLPCLSSI CPQPLEIRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.221849
Match:	2jfuA
Description:	No description for 2jfuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits