YRC Public Data Repository - Protein Structure Prediction

Protein:	CYSA_SYNY3
Organism:	Synechocystis sp. PCC 6803 substr. Kazusa
Length:	355 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYSA_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|15643988, gi\|... - gi\|4981786\|gb\|AAD36307.1\|AE001779_9 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|281412971\|ref... - ABC transporter related protein [Thermotoga naphthophila RKU-10] gi\|170289367, gi... - gi\|170289367\|ref\|YP_001739605.1\| ABC transporter related [Thermotoga sp. RQ2], gi\|170176870\|gb\|ACB09... gi\|7442603 - pir\|\|A72279 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)	380.0	[0..3]	[348..4]
gi\|91223919, gi\|... - gi\|91223919\|ref\|ZP_01259183.1\| probable ATP-binding component of ABC transporter [Vibrio alginolytic...	371.0	[0..3]	[341..9]
gi\|18894174, gi\|... - gi\|18978342\|ref\|NP_579699.1\| putative multiple sugar-binding transport ATP-binding protein [Pyrococc...	370.0	[0..1]	[349..11]
gi\|17936034, gi\|... - gi\|17936034\|ref\|NP_532824.1\| ABC transporter, nucleotide binding/ATPase protein [Agrobacterium tumef... gi\|25297123, gi\|... - pir\|\|H97617 ABC transporter, ATP-binding protein VCA0602 [imported] - Agrobacterium tumefaciens (str...	370.0	[0..3]	[339..4]
gi\|119720071, gi... - gi\|119720071\|ref\|YP_920566.1\| ABC transporter related [Thermofilum pendens Hrk 5], gi\|119525191\|gb\|A...	369.0	[0..3]	[345..4]
gi\|194540607, gi... - gi\|75856552\|ref\|ZP_00764178.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com...	369.0	[0..3]	[341..9]
CYSA_THEEB - Sulfate/thiosulfate import ATP-binding protein CysA OS=Thermosynechococcus elongatus (strain BP-1) G... CYSA_SYNEL - Sulfate/thiosulfate import ATP-binding protein cysA OS=Synechococcus elongatus GN=cysA PE=3 SV=1	367.0	[0..1]	[336..1]
gi\|7442503 - pir\|\|H71241 probable multiple sugar-binding transport ATP-binding protein - Pyrococcus horikoshii gi\|3256580, gi\|1... - gi\|3256580\|dbj\|BAA29263.1\| 375aa long hypothetical multiple sugar-binding transport ATP-binding prot...	367.0	[0..3]	[345..7]
gi\|148654949, gi... - gi\|148654949\|ref\|YP_001275154.1\| spermidine/putrescine ABC transporter ATPase subunit [Roseiflexus s...	366.0	[0..3]	[347..4]

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Predicted Domain #1

Region A:
Residues: [1-355]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIIINNVSK QFGDFTALKD INLEVPDGKL VALLGPSGSG KSTLLRAIAG LEEPDQGQII  60
   61 INGQDATHVD IRKRNIGFVF QHYALFKHLT IRQNIAFGLE IRKHPPAKTK ERVEELLSLI 120
  121 QLEGLGNRYP SQLSGGQRQR VALARALAVQ PQVLLLDEPF GALDAKVRKE LRAWLRKLHD 180
  181 EVHLTSVFVT HDQEEAMEVA DEIVVMSNGK IEQVGTAEEI YEHPASPFVM GFIGEVNVLP 240
  241 RNASLFNYHA FEPHSSNNGH QEPVFVRPHD FELLTEADDA SVAGTIKRVI HLGSEIQVEV 300
  301 LLMDNTAVLA YLNREQGQQL NPKAGKKVFI KPRVAKVFAG ASSAASTHFI YGTGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits