YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIQ_BUCBP
Organism:	Buchnera aphidicola str. Bp (Baizongia pistaciae)
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIQ_BUCBP.

Description	E-value	Query Range	Subject Range
gi\|39545584 - gi\|39545584\|gb\|AAR27891.1\| AscS [Aeromonas hydrophila]	85.0	[0..1]	[87..18]
gi\|167040313, gi... - gi\|167040313\|ref\|YP_001663298.1\| flagellar biosynthesis protein FliQ [Thermoanaerobacter sp. X514], ... gi\|242231911, gi... - gi\|242256538\|ref\|ZP_04801427.1\| flagellar biosynthetic protein FliQ [Thermoanaerobacter sp. X513], g...	84.0	[0..1]	[88..1]
gi\|17430843 - gi\|17430843\|emb\|CAD17525.1\| probable flagellar biosynthetic fliq transmembrane protein [Ralstonia so... gi\|17548595 - gi\|17548595\|ref\|NP_521935.1\| flagellar biosynthesis protein FliQ [Ralstonia solanacearum GMI1000]	83.0	[0..1]	[88..1]
gi\|23476205, gi\|... - gi\|78358621\|ref\|YP_390070.1\| flagellar biosynthetic protein FliQ [Desulfovibrio desulfuricans subsp....	83.0	[0..1]	[89..1]
gi\|51857815, gi\|... - gi\|51894126\|ref\|YP_076817.1\| flagellar biosynthetic protein [Symbiobacterium thermophilum IAM 14863]...	82.0	[0..1]	[89..1]
gi\|20807872, gi\|... - gi\|20807872\|ref\|NP_623043.1\| flagellar biosynthesis protein FliQ [Thermoanaerobacter tengcongensis M... gi\|20807872 - gi\|20807872\|ref\|NP_623043.1\| flagellar biosynthesis protein [Thermoanaerobacter tengcongensis MB4]	82.0	[0..1]	[88..1]
gi\|108757472, gi... - gi\|108757472\|ref\|YP_630668.1\| FliQ/MopD/SpaQ family protein [Myxococcus xanthus DK 1622], gi\|1084613...	81.0	[0..6]	[88..4]
gi\|166856486, gi... - gi\|76796433\|ref\|ZP_00778795.1\| Flagellar biosynthesis protein FliQ [Thermoanaerobacter ethanolicus A... gi\|241903163, gi... - gi\|241903163\|ref\|ZP_04787890.1\| flagellar biosynthetic protein FliQ [Thermoanaerobacter brockii subs...	80.0	[0..1]	[88..1]
gi\|110550025, gi... - gi\|222053617\|ref\|YP_002535979.1\| flagellar biosynthetic protein FliQ [Geobacter sp. FRC-32], gi\|2215...	80.0	[0..1]	[89..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIESVMSLF YDAMKVTLMI SLPLLLSALC CGLIVSIFQA ATQINEQTLS FIPKIAAVLV  60
   61 SIVIFGPWML VILSDYTHTL FYNLSYITYS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.657577
Match:	PF01313.10
Description:	No description for PF01313.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.960	0.032	protein secretion	a.24.4	Hemerythrin
View	Download	0.944	0.032	protein secretion	a.2.7	tRNA-binding arm
View	Download	0.969	0.008	protein secretion	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.961	0.008	protein secretion	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain
View	Download	0.948	N/A	N/A	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits