YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24053521, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24053521, gi|....

Description	E-value	Query Range	Subject Range
gi\|110595055, gi... - gi\|110595055\|ref\|ZP_01383393.1\| undecaprenol kinase, putative [Acidovorax sp. JS42], gi\|110335605\|gb...	322.0	[0..4]	[274..284]
gi\|15833194, gi\|... - gi\|15833194\|ref\|NP_311967.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli O157:H7 str. S... UPPP_ECOLC - Undecaprenyl-diphosphatase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=uppP PE=3 S... gi\|188013573, gi... - gi\|188013573\|gb\|EDU51695.1\| undecaprenyl-diphosphatase BacA [Escherichia coli O157:H7 str. EC4113], ... gi\|189369389, gi... - gi\|189369389\|gb\|EDU87805.1\| undecaprenyl-diphosphatase BacA [Escherichia coli O157:H7 str. EC4501], ... gi\|189363605, gi... - gi\|189363605\|gb\|EDU82024.1\| undecaprenyl-diphosphatase BacA [Escherichia coli O157:H7 str. EC4486], ... gi\|189379805, gi... - gi\|189379805\|gb\|EDU98221.1\| undecaprenyl-diphosphatase BacA [Escherichia coli O157:H7 str. EC508], g... UPPP_ECODH - Undecaprenyl-diphosphatase OS=Escherichia coli (strain K12 / DH10B) GN=uppP PE=3 SV=1 gi\|187775792, gi... - gi\|187775792\|ref\|ZP_02798295.2\| undecaprenyl-diphosphatase BacA [Escherichia coli O157:H7 str. EC419... gi\|195937201 - gi\|195937201\|ref\|ZP_03082583.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli O157:H7 str... EG11665 - undecaprenyl pyrophosphate phosphatase / Undecaprenyl pyrophosphate phosphatase BacA(UppP); overexpr... gi\|208809058, gi... - gi\|208809058\|ref\|ZP_03251395.1\| undecaprenyl-diphosphatase BacA [Escherichia coli O157:H7 str. EC420... gi\|208812159, gi... - gi\|208812159\|ref\|ZP_03253488.1\| undecaprenyl-diphosphatase BacA [Escherichia coli O157:H7 str. EC404... UPPP_ECO5E - Undecaprenyl-diphosphatase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=uppP PE=3 SV=1 gi\|217327873, gi... - gi\|217327873\|ref\|ZP_03443956.1\| undecaprenyl-diphosphatase BacA [Escherichia coli O157:H7 str. TW145... gi\|254594408, gi... - gi\|254795008\|ref\|YP_003079845.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli O157:H7 st... UPPP_ECO57 - Undecaprenyl-diphosphatase OS=Escherichia coli O157:H7 GN=uppP PE=3 SV=1 gi\|253974905, gi... - gi\|254163004\|ref\|YP_003046112.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli B str. REL... gi\|226839849, gi... - gi\|254038225\|ref\|ZP_04872283.1\| undecaprenyl-diphosphatase BacA [Escherichia sp. 1_1_43], gi\|2268398... UPPP_ECOLI - Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl pyrophosphate phosphatase) (Bacitracin resist... gi\|253772107, gi... - gi\|254289754\|ref\|YP_003055502.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli BL21(DE3)]... gi\|242378607, gi... - gi\|251786334\|ref\|YP_003000638.1\| hypothetical protein B21_02877 [Escherichia coli BL21], gi\|24237860... UPPP_ECOBW - Undecaprenyl-diphosphatase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=uppP PE=3 SV=1 EG11665 - undecaprenyl pyrophosphate phosphatase / Undecaprenyl pyrophosphate phosphatase BacA(UppP); overexpr... gi\|83587505 - gi\|83587505\|ref\|ZP_00926132.1\| COG1968: Uncharacterized bacitracin resistance protein [Escherichia c... UPPP_ECOHS - Undecaprenyl-diphosphatase OS=Escherichia coli O9:H4 (strain HS) GN=uppP PE=3 SV=1 gi\|124526032, gi... - gi\|124526032\|ref\|ZP_01698037.1\| putative undecaprenol kinase [Escherichia coli B], gi\|124502136\|gb\|E... gi\|75511259, gi\|... - gi\|75511259\|ref\|ZP_00733957.1\| COG1968: Uncharacterized bacitracin resistance protein [Escherichia c... gi\|89109827, gi\|... - gi\|89109827\|ref\|AP_003607.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli str. K-12 subs...	319.0	[0..2]	[274..1]
UPPP_ECOL6 - Undecaprenyl-diphosphatase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=uppP PE... UPPP_ECO45 - Undecaprenyl-diphosphatase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=uppP PE=3 SV=1 UPPP_ECO81 - Undecaprenyl-diphosphatase OS=Escherichia coli O81 (strain ED1a) GN=uppP PE=3 SV=1 UPPP_ECOK1 - Undecaprenyl-diphosphatase OS=Escherichia coli O1:K1 / APEC GN=uppP PE=3 SV=1 UPPP_ECOSE - Undecaprenyl-diphosphatase OS=Escherichia coli (strain SE11) GN=uppP PE=3 SV=1 UPPP_ECO8A - Undecaprenyl-diphosphatase OS=Escherichia coli O8 (strain IAI1) GN=uppP PE=3 SV=1 UPPP_ECOUT - Undecaprenyl-diphosphatase OS=Escherichia coli (strain UTI89 / UPEC) GN=uppP PE=3 SV=2 gi\|75240482 - gi\|75240482\|ref\|ZP_00724410.1\| COG1968: Uncharacterized bacitracin resistance protein [Escherichia c... UPPP_ECOL5 - Undecaprenyl-diphosphatase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=uppP PE=3 SV=1 gi\|75259990 - gi\|75259990\|ref\|ZP_00731268.1\| COG1968: Uncharacterized bacitracin resistance protein [Escherichia c... UPPP_SHIF8 - Undecaprenyl-diphosphatase OS=Shigella flexneri serotype 5b (strain 8401) GN=uppP PE=3 SV=1 gi\|30042662, gi\|... - gi\|30064405\|ref\|NP_838576.1\| undecaprenyl pyrophosphate phosphatase [Shigella flexneri 2a str. 2457T... UPPP_SHIBS - Undecaprenyl-diphosphatase OS=Shigella boydii serotype 4 (strain Sb227) GN=uppP PE=3 SV=1 gi\|56480249, gi\|... - gi\|56480249\|ref\|NP_708867.2\| undecaprenyl pyrophosphate phosphatase [Shigella flexneri 2a str. 301],... UPPP_SHIFL - Undecaprenyl-diphosphatase OS=Shigella flexneri GN=uppP PE=3 SV=1 UPPP_ECO55 - Undecaprenyl-diphosphatase OS=Escherichia coli (strain 55989 / EAEC) GN=uppP PE=3 SV=1 UPPP_SHIB3 - Undecaprenyl-diphosphatase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=uppP PE=3 ... UPPP_ECOLU - Undecaprenyl-diphosphatase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=uppP PE=3 SV=1 UPPP_ECOL6 - Undecaprenyl-diphosphatase OS=Escherichia coli O6 GN=uppP PE=3 SV=1 UPPP_ECO24 - Undecaprenyl-diphosphatase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=uppP PE=3 SV=1 gi\|75212309 - gi\|75212309\|ref\|ZP_00712333.1\| COG1968: Uncharacterized bacitracin resistance protein [Escherichia c... gi\|75227957 - gi\|75227957\|ref\|ZP_00714652.1\| COG1968: Uncharacterized bacitracin resistance protein [Escherichia c... gi\|75239372 - gi\|75239372\|ref\|ZP_00723343.1\| COG1968: Uncharacterized bacitracin resistance protein [Escherichia c... gi\|227887780, gi... - gi\|227887780\|ref\|ZP_04005585.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli 83972], gi\|...	319.0	[0..2]	[274..1]
gi\|15803599, gi\|... - gi\|15803599\|ref\|NP_289632.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli O157:H7 EDL933... gi\|25329302 - gi\|25329302\|pir\|\|C85966 hypothetical protein bacA [imported] - Escherichia coli (strain O157:H7, su...	319.0	[0..2]	[274..1]
UPPP_SHISS - Undecaprenyl-diphosphatase OS=Shigella sonnei (strain Ss046) GN=uppP PE=3 SV=1	318.0	[0..2]	[274..1]
lcl\|NC_016856.1_... - [gene=uppP] [protein=undecaprenyl pyrophosphate phosphatase] [protein_id=YP_005239380.1] [location=c... gi\|16766505, gi\|... - gi\|16766505\|ref\|NP_462120.1\| undecaprenyl pyrophosphate phosphatase [Salmonella typhimurium LT2], gi... gi\|206710266, gi... - gi\|207858463\|ref\|YP_002245114.1\| undecaprenyl pyrophosphate phosphatase [Salmonella enterica subsp. ... gi\|205273901, gi... - gi\|205354120\|ref\|YP_002227921.1\| undecaprenyl pyrophosphate phosphatase [Salmonella enterica subsp. ...	315.0	[0..1]	[262..1]
UPPP_SALCH - Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl pyrophosphate phosphatase) (Bacitracin resist... gi\|62129355, gi\|... - gi\|62181722\|ref\|YP_218139.1\| undecaprenyl pyrophosphate phosphatase [Salmonella enterica subsp. ente...	314.0	[0..1]	[262..1]
UPPP_SALTI - Undecaprenyl-diphosphatase OS=Salmonella typhi GN=uppP PE=3 SV=1 UPPP_SALHS - Undecaprenyl-diphosphatase OS=Salmonella heidelberg (strain SL476) GN=uppP PE=3 SV=1 gi\|29139100, gi\|... - gi\|29143466\|ref\|NP_806808.1\| undecaprenyl pyrophosphate phosphatase [Salmonella enterica subsp. ente... gi\|194470826, gi... - gi\|194470826\|ref\|ZP_03076810.1\| undecaprenyl-diphosphatase BacA [Salmonella enterica subsp. enterica... UPPP_SALSV - Undecaprenyl-diphosphatase OS=Salmonella schwarzengrund (strain CVM19633) GN=uppP PE=3 SV=1 UPPP_SALA4 - Undecaprenyl-diphosphatase OS=Salmonella agona (strain SL483) GN=uppP PE=3 SV=1 gi\|168262834, gi... - gi\|205348463\|gb\|EDZ35094.1\| undecaprenyl-diphosphatase BacA [Salmonella enterica subsp. enterica ser... gi\|168463584, gi... - gi\|195633414\|gb\|EDX51828.1\| undecaprenyl-diphosphatase BacA [Salmonella enterica subsp. enterica ser... gi\|16761979 - gi\|16761979\|ref\|NP_457596.1\| undecaprenyl pyrophosphate phosphatase [Salmonella enterica subsp. ente... gi\|168819730, gi... - gi\|205343354\|gb\|EDZ30118.1\| undecaprenyl-diphosphatase BacA [Salmonella enterica subsp. enterica ser... UPPP_SALNS - Undecaprenyl-diphosphatase OS=Salmonella newport (strain SL254) GN=uppP PE=3 SV=1 gi\|205331111, gi... - gi\|205331111\|gb\|EDZ17875.1\| undecaprenyl-diphosphatase BacA [Salmonella enterica subsp. enterica ser... gi\|205333913, gi... - gi\|205333913\|gb\|EDZ20677.1\| undecaprenyl-diphosphatase BacA [Salmonella enterica subsp. enterica ser... gi\|197289009, gi... - gi\|197289009\|gb\|EDY28380.1\| undecaprenyl-diphosphatase BacA [Salmonella enterica subsp. enterica ser... gi\|205337791, gi... - gi\|205337791\|gb\|EDZ24555.1\| undecaprenyl-diphosphatase BacA [Salmonella enterica subsp. enterica ser... gi\|205323329, gi... - gi\|205323329\|gb\|EDZ11168.1\| undecaprenyl-diphosphatase BacA [Salmonella enterica subsp. enterica ser... UPPP_SALTY - Undecaprenyl-diphosphatase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=uppP P... gi\|213425624 - gi\|213425624\|ref\|ZP_03358374.1\| undecaprenyl pyrophosphate phosphatase [Salmonella enterica subsp. e... gi\|213581446 - gi\|213581446\|ref\|ZP_03363272.1\| undecaprenyl pyrophosphate phosphatase [Salmonella enterica subsp. e... gi\|213619172 - gi\|213619172\|ref\|ZP_03372998.1\| undecaprenyl pyrophosphate phosphatase [Salmonella enterica subsp. e... gi\|213646112 - gi\|213646112\|ref\|ZP_03376165.1\| undecaprenyl pyrophosphate phosphatase [Salmonella enterica subsp. e... gi\|197263324, gi... - gi\|197263324\|ref\|ZP_03163398.1\| undecaprenyl-diphosphatase BacA [Salmonella enterica subsp. enterica... gi\|200387169, gi... - gi\|200387169\|ref\|ZP_03213781.1\| undecaprenyl-diphosphatase BacA [Salmonella enterica subsp. enterica... gi\|204928411, gi... - gi\|204928411\|ref\|ZP_03219611.1\| undecaprenyl-diphosphatase BacA [Salmonella enterica subsp. enterica... gi\|213161050 - gi\|213161050\|ref\|ZP_03346760.1\| undecaprenyl pyrophosphate phosphatase [Salmonella enterica subsp. e... gi\|238910007 - gi\|238910007\|ref\|ZP_04653844.1\| undecaprenyl pyrophosphate phosphatase [Salmonella enterica subsp. e... UPPP_SALTI - Undecaprenyl-diphosphatase OS=Salmonella typhi GN=uppP PE=3 SV=1 UPPP_SALTY - Undecaprenyl-diphosphatase OS=Salmonella typhimurium GN=uppP PE=3 SV=1 UPPP_SALTY - Undecaprenyl-diphosphatase OS=Salmonella typhimurium GN=uppP PE=3 SV=1	313.0	[0..2]	[262..1]
UPPP_SALPA - Undecaprenyl-diphosphatase OS=Salmonella paratyphi A GN=uppP PE=3 SV=1 UPPP_SALCH - Undecaprenyl-diphosphatase OS=Salmonella choleraesuis (strain SC-B67) GN=uppP PE=3 SV=2 UPPP_SALCH - Undecaprenyl-diphosphatase OS=Salmonella choleraesuis GN=uppP PE=3 SV=2 UPPP_SALPK - Undecaprenyl-diphosphatase OS=Salmonella paratyphi A (strain AKU_12601) GN=uppP PE=3 SV=1 UPPP_SALPA - Undecaprenyl-diphosphatase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=uppP PE=3 SV=1 UPPP_SALCH - Undecaprenyl-diphosphatase OS=Salmonella choleraesuis GN=uppP PE=3 SV=2	312.0	[0..2]	[262..1]
UPPP_PSEAB - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=uppP PE=3 SV=1	300.0	[0..3]	[273..1]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSDMHSLLI AAILGVVEGL TEFLPVSSTG HMIIVGHLLG FEGDTAKTFE VVIQLGSILA  60
   61 VVVMFWRRLF GLIGIHFGRP LQH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGESKGRLTL IHILLGMIPA VVLGLLFHDT IKSLFNPINV MYALVVGGLL LIAAECLKPK  60
   61 EPRAPGLDDM TYRQAFMIGC FQCLALWPGF SRSGATISGG MLMGVSRYAA SEFSFLLAVP 120
  121 MMMGATALDL YKSWGFLTTG DIPMFAVGFI TAFVVALIAI KTFLQLIKRI SFIPFAIYRF 180
  181 IVAAAVYVVF F

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits