YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|26246486, gi\|...
Organism:	Escherichia coli CFT073
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26246486, gi|....

Description	E-value	Query Range	Subject Range
gi\|113527138, gi... - gi\|113868362\|ref\|YP_726851.1\| recombinational DNA repair protein (RecF pathway) [Ralstonia eutropha ...	157.0	[0..7]	[112..1]
Y1507_MANSM - Nucleoid-associated protein MS1507 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=MS1507 PE=3 ...	149.0	[0..6]	[114..1]
YBAB_ECOLI - UPF0133 protein ybaB - Escherichia coli YBAB_SHIBS - Nucleoid-associated protein YbaB OS=Shigella boydii serotype 4 (strain Sb227) GN=ybaB PE=3 SV=1 YBAB_SALCH - Nucleoid-associated protein YbaB OS=Salmonella choleraesuis (strain SC-B67) GN=ybaB PE=3 SV=1 YBAB_SHISS - Nucleoid-associated protein YbaB OS=Shigella sonnei (strain Ss046) GN=ybaB PE=3 SV=1 YBAB_SHIDS - Nucleoid-associated protein YbaB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ybaB PE=3 SV=1 gi\|85674610, gi\|... - gi\|89107340\|ref\|AP_001120.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|56479670, gi\|... - gi\|56479670\|ref\|NP_706364.2\| hypothetical protein SF0416 [Shigella flexneri 2a str. 301], gi\|5638322... gi\|194412940, gi... - gi\|75209773\|ref\|ZP_00709975.1\| COG0718: Uncharacterized protein conserved in bacteria [Escherichia c... YBAB_SALAR - Nucleoid-associated protein YbaB OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) ... YBAB_ECOSE - Nucleoid-associated protein YbaB OS=Escherichia coli (strain SE11) GN=ybaB PE=3 SV=1 gi\|75229368, gi\|... - gi\|75229368\|ref\|ZP_00715923.1\| COG0718: Uncharacterized protein conserved in bacteria [Escherichia c... YBAB_ECOLC - Nucleoid-associated protein YbaB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ybaB ... YBAB_ECO5E - Nucleoid-associated protein YbaB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ybaB PE=3 SV=... YBAB_SHIB3 - Nucleoid-associated protein YbaB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ybaB... gi\|213615955 - gi\|213615955\|ref\|ZP_03371781.1\| hypothetical protein SentesTyp_16389 [Salmonella enterica subsp. ent... YBAB_ECOHS - Nucleoid-associated protein YbaB OS=Escherichia coli O9:H4 (strain HS) GN=ybaB PE=3 SV=1 gi\|213421305 - gi\|213421305\|ref\|ZP_03354371.1\| hypothetical protein Salmonentericaenterica_27679 [Salmonella enteri... gi\|75257884, gi\|... - gi\|75257884\|ref\|ZP_00729362.1\| COG0718: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|213865425 - gi\|213865425\|ref\|ZP_03387544.1\| hypothetical protein SentesT_37068 [Salmonella enterica subsp. enter... gi\|188493430, gi... - gi\|75514594\|ref\|ZP_00736849.1\| COG0718: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|213650777 - gi\|213650777\|ref\|ZP_03380830.1\| hypothetical protein SentesTy_28246 [Salmonella enterica subsp. ente... gi\|190906015, gi... - gi\|75238223\|ref\|ZP_00722224.1\| COG0718: Uncharacterized protein conserved in bacteria [Escherichia c... YBAB_ECO27 - Nucleoid-associated protein YbaB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ybaB PE=3 S... gi\|192959097, gi... - gi\|75239033\|ref\|ZP_00723015.1\| COG0718: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|214002415 - gi\|214002415\|ref\|ZP_03413150.1\| hypothetical protein Salmonellentericaenterica_19366 [Salmonella ent... gi\|200390240, gi... - gi\|200390240\|ref\|ZP_03216851.1\| conserved hypothetical protein TIGR00103 [Salmonella enterica subsp.... YBAB_SALDC - Nucleoid-associated protein YbaB OS=Salmonella dublin (strain CT_02021853) GN=ybaB PE=3 SV=1 YBAB_SALG2 - Nucleoid-associated protein YbaB OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ybaB PE=3 ... gi\|204930620, gi... - gi\|204930620\|ref\|ZP_03221550.1\| conserved hypothetical protein TIGR00103 [Salmonella enterica subsp.... gi\|83570195, gi\|... - gi\|83570195\|ref\|ZP_00921641.1\| COG0718: Uncharacterized protein conserved in bacteria [Shigella dyse... gi\|208809548, gi... - gi\|208809548\|ref\|ZP_03251885.1\| conserved hypothetical protein TIGR00103 [Escherichia coli O157:H7 s... gi\|194437385, gi... - gi\|83587074\|ref\|ZP_00925704.1\| COG0718: Uncharacterized protein conserved in bacteria [Escherichia c... YBAB_SALPB - UPF0133 protein ybaB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ybaB PE=3 SV=1 YBAB_SALEP - Nucleoid-associated protein YbaB OS=Salmonella enteritidis PT4 (strain P125109) GN=ybaB PE=3 SV=1 gi\|208737249, gi... - gi\|208823056\|ref\|ZP_03263374.1\| conserved hypothetical protein TIGR00103 [Escherichia coli O157:H7 s... YBAB_SALCH - UPF0133 protein ybaB OS=Salmonella choleraesuis GN=ybaB PE=3 SV=1 gi\|208814920, gi... - gi\|208814920\|ref\|ZP_03256099.1\| conserved hypothetical protein TIGR00103 [Escherichia coli O157:H7 s... YBAB_ESCF3 - Nucleoid-associated protein YbaB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568... YBAB_ECOL6 - Nucleoid-associated protein YbaB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=y... gi\|217320419, gi... - gi\|217324198\|ref\|ZP_03440282.1\| conserved hypothetical protein TIGR00103 [Escherichia coli O157:H7 s... YBAB_ECO81 - Nucleoid-associated protein YbaB OS=Escherichia coli O81 (strain ED1a) GN=ybaB PE=3 SV=1 YBAB_ECO45 - Nucleoid-associated protein YbaB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ybaB PE=3 SV=1 YBAB_ECO7I - Nucleoid-associated protein YbaB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ybaB PE=3 SV=1 YBAB_ECO55 - Nucleoid-associated protein YbaB OS=Escherichia coli (strain 55989 / EAEC) GN=ybaB PE=3 SV=1 YBAB_SALPC - Nucleoid-associated protein YbaB OS=Salmonella paratyphi C (strain RKS4594) GN=ybaB PE=3 SV=1 YBAB_ECOLU - Nucleoid-associated protein YbaB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ybaB PE=... gi\|205334010, gi... - gi\|205334010\|gb\|EDZ20774.1\| conserved hypothetical protein TIGR00103 [Salmonella enterica subsp. ent... gi\|167990472, gi... - gi\|205331043\|gb\|EDZ17807.1\| conserved hypothetical protein TIGR00103 [Salmonella enterica subsp. ent... gi\|205339885, gi... - gi\|205339885\|gb\|EDZ26649.1\| conserved hypothetical protein TIGR00103 [Salmonella enterica subsp. ent... gi\|168237602, gi... - gi\|197289577\|gb\|EDY28940.1\| conserved hypothetical protein TIGR00103 [Salmonella enterica subsp. ent... gi\|168465582, gi... - gi\|195632035\|gb\|EDX50555.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205349942, gi... - gi\|205349942\|gb\|EDZ36573.1\| conserved hypothetical protein TIGR00103 [Salmonella enterica subsp. ent... YBAB_ECODH - Nucleoid-associated protein YbaB OS=Escherichia coli (strain K12 / DH10B) GN=ybaB PE=3 SV=1 gi\|205344092, gi... - gi\|205344092\|gb\|EDZ30856.1\| conserved hypothetical protein TIGR00103 [Salmonella enterica subsp. ent... YBAB_SALTY - UPF0133 protein ybaB OS=Salmonella typhimurium GN=ybaB PE=3 SV=1 EG11100 - DNA-binding protein, putative nucleoid-associated protein / DNA-binding protein, probable nucleoid-a... sp\|B7UKF1\|YBAB_ECO27 - UPF0133 protein ybaB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ybaB PE=3 SV=1 gi\|167550988, gi... - gi\|205324172\|gb\|EDZ12011.1\| conserved hypothetical protein TIGR00103 [Salmonella enterica subsp. ent... YBAB_SALNS - Nucleoid-associated protein YbaB OS=Salmonella newport (strain SL254) GN=ybaB PE=3 SV=1 gi\|189405611, gi... - gi\|189405611\|ref\|ZP_02823044.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]... gi\|194456929, gi... - gi\|194470565\|ref\|ZP_03076549.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YBAB_SALHS - Nucleoid-associated protein YbaB OS=Salmonella heidelberg (strain SL476) GN=ybaB PE=3 SV=1 gi\|195936034 - gi\|195936034\|ref\|ZP_03081416.1\| hypothetical protein EscherichcoliO157_06141 [Escherichia coli O157:... YBAB_SALSV - Nucleoid-associated protein YbaB OS=Salmonella schwarzengrund (strain CVM19633) GN=ybaB PE=3 SV=1 gi\|197243760, gi... - gi\|197265505\|ref\|ZP_03165579.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YBAB_SALA4 - Nucleoid-associated protein YbaB OS=Salmonella agona (strain SL483) GN=ybaB PE=3 SV=1 gi\|187767560, gi... - gi\|187776370\|ref\|ZP_02802176.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196... YBAB_ECOSM - Nucleoid-associated protein YbaB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ybaB PE=3 SV=1 gi\|189010025, gi... - gi\|189010025\|ref\|ZP_02803973.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076... gi\|188017591, gi... - gi\|188024620\|ref\|ZP_02772873.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113... gi\|189362488, gi... - gi\|189403123\|ref\|ZP_02793435.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486... gi\|189358065, gi... - gi\|189402031\|ref\|ZP_02779585.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401... gi\|189373470, gi... - gi\|189404804\|ref\|ZP_02811331.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... gi\|189369059, gi... - gi\|189403806\|ref\|ZP_02785379.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501... YBAB_SHIFL - Nucleoid-associated protein YbaB OS=Shigella flexneri GN=ybaB PE=3 SV=1 lcl\|NC_016856.1_... - [gene=ybaB] [protein=hypothetical protein] [protein_id=YP_005236183.1] [location=543575..543904] YBAB_SALTI - Nucleoid-associated protein YbaB OS=Salmonella typhi GN=ybaB PE=3 SV=1 YBAB_SALTY - Nucleoid-associated protein YbaB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=... gi\|29138396, gi\|... - gi\|29142764\|ref\|NP_806106.1\| hypothetical protein t2375 [Salmonella enterica subsp. enterica serovar... gi\|30061971, gi\|... - gi\|30061971\|ref\|NP_836142.1\| hypothetical protein S0423 [Shigella flexneri 2a str. 2457T], gi\|300402... YBAB_ECO57 - Nucleoid-associated protein YbaB OS=Escherichia coli O157:H7 GN=ybaB PE=3 SV=1 EG11100 - DNA-binding protein, putative nucleoid-associated protein / DNA-binding protein, probable nucleoid-a... gi\|16759464 - gi\|16759464\|ref\|NP_455081.1\| hypothetical protein STY0529 [Salmonella enterica subsp. enterica serov... gi\|12513341, gi\|... - gi\|15800200\|ref\|NP_286212.1\| hypothetical protein Z0588 [Escherichia coli O157:H7 EDL933], gi\|125133... gi\|238911385 - gi\|238911385\|ref\|ZP_04655222.1\| hypothetical protein SentesTe_09635 [Salmonella enterica subsp. ente... gi\|242376253, gi... - gi\|251783980\|ref\|YP_002998284.1\| hypothetical protein B21_00427 [Escherichia coli BL21], gi\|24237625... gi\|253774539, gi... - gi\|254287344\|ref\|YP_003053092.1\| hypothetical protein ECD_00422 [Escherichia coli BL21(DE3)], gi\|253... gi\|253972441, gi... - gi\|254160540\|ref\|YP_003043648.1\| hypothetical protein ECB_00422 [Escherichia coli B str. REL606], gi... gi\|254791654, gi... - gi\|254791654\|ref\|YP_003076491.1\| hypothetical protein ECSP_0538 [Escherichia coli O157:H7 str. TW143... YBAB_ECOL6 - UPF0133 protein ybaB OS=Escherichia coli O6 GN=ybaB PE=3 SV=1 YBAB_SALTI - UPF0133 protein ybaB OS=Salmonella typhi GN=ybaB PE=3 SV=1 YBAB_SALTY - UPF0133 protein ybaB OS=Salmonella typhimurium GN=ybaB PE=3 SV=1 YBAB_ECOL5 - Nucleoid-associated protein YbaB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ybaB PE=3 SV=... YBAB_SHIF8 - Nucleoid-associated protein YbaB OS=Shigella flexneri serotype 5b (strain 8401) GN=ybaB PE=3 SV=1 gi\|15829778, gi\|... - gi\|15829778\|ref\|NP_308551.1\| hypothetical protein ECs0524 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|227884516, gi... - gi\|227884516\|ref\|ZP_04002321.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783860... gi\|237707531, gi... - gi\|237707531\|ref\|ZP_04538012.1\| ybaB [Escherichia sp. 3_2_53FAA], gi\|226898741\|gb\|EEH85000.1\| ybaB [... YBAB_ECOBW - Nucleoid-associated protein YbaB OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ybaB PE=3 SV=... YBAB_ECOK1 - Nucleoid-associated protein YbaB OS=Escherichia coli O1:K1 / APEC GN=ybaB PE=3 SV=1 gi\|124499303, gi... - gi\|124530278\|ref\|ZP_01700997.1\| conserved hypothetical protein 103 [Escherichia coli B], gi\|12449930... YBAB_SALPB - Nucleoid-associated protein YbaB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ybaB PE=... YBAB_SALCH - UPF0133 protein ybaB OS=Salmonella choleraesuis GN=ybaB PE=3 SV=1	148.0	[0..6]	[114..1]
YBAB_ECO24 - Nucleoid-associated protein YbaB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ybaB PE=3 S...	147.0	[0..6]	[114..1]
gi\|254843889, gi... - gi\|254848184\|ref\|ZP_05237534.1\| recombinational DNA repair protein [Vibrio cholerae MO10], gi\|254843... gi\|229608369, gi... - gi\|229608369\|ref\|YP_002879017.1\| transcriptional regulatory protein [Vibrio cholerae MJ-1236], gi\|22... gi\|148876363, gi... - gi\|153828121\|ref\|ZP_01980788.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887636... gi\|153824934, gi... - gi\|153824934\|ref\|ZP_01977601.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149741446... gi\|147675358, gi... - gi\|227117421\|ref\|YP_002819317.1\| hypothetical protein VC395_1069 [Vibrio cholerae O395], gi\|22701287... gi\|9655521, gi\|1... - gi\|9655521\|gb\|AAF94214.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|227081228, gi... - gi\|227081228\|ref\|YP_002809779.1\| hypothetical protein VCM66_1010 [Vibrio cholerae M66-2], gi\|2270091... gi\|11278458 - gi\|11278458\|pir\|\|A82247 conserved hypothetical protein VC1055 [imported] - Vibrio cholerae (strain N... gi\|153803674, gi... - gi\|153803674\|ref\|ZP_01958260.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124120793... gi\|229510980, gi... - gi\|229510980\|ref\|ZP_04400459.1\| transcriptional regulatory protein [Vibrio cholerae B33], gi\|2293509... gi\|229505350, gi... - gi\|229505350\|ref\|ZP_04394860.1\| transcriptional regulatory protein [Vibrio cholerae BX 330286], gi\|2... gi\|229518101, gi... - gi\|229518101\|ref\|ZP_04407545.1\| transcriptional regulatory protein [Vibrio cholerae RC9], gi\|2293448... gi\|229347206, gi... - gi\|229515437\|ref\|ZP_04404896.1\| transcriptional regulatory protein [Vibrio cholerae TMA 21], gi\|2293... gi\|229525664, gi... - gi\|229525664\|ref\|ZP_04415069.1\| transcriptional regulatory protein [Vibrio cholerae bv. albensis VL4... gi\|229523158, gi... - gi\|229523158\|ref\|ZP_04412565.1\| transcriptional regulatory protein [Vibrio cholerae TM 11079-80], gi...	147.0	[0..2]	[114..8]
Y205_PASMU - Nucleoid-associated protein PM0205 OS=Pasteurella multocida (strain Pm70) GN=PM0205 PE=3 SV=1 Y205_PASMU - UPF0133 protein PM0205 OS=Pasteurella multocida GN=PM0205 PE=3 SV=1	146.0	[0..6]	[114..1]
Y3840_PHOLL, Y2E... - UPF0133 protein plu3840 OS=Photorhabdus luminescens subsp. laumondii GN=plu3840 PE=3 SV=1, (Q7N0P1) ... Y3840_PHOLL - Nucleoid-associated protein plu3840 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 /...	145.0	[0..6]	[114..1]
Y690_SODGM - Nucleoid-associated protein SG0690 OS=Sodalis glossinidius (strain morsitans) GN=SG0690 PE=3 SV=1	145.0	[0..6]	[114..1]
Y308_HISS2 - Nucleoid-associated protein HSM_0308 OS=Histophilus somni (strain 2336) GN=HSM_0308 PE=3 SV=1 Y1309_HAES1 - Nucleoid-associated protein HS_1309 OS=Haemophilus somnus (strain 129Pt) GN=HS_1309 PE=3 SV=1	143.0	[0..6]	[114..1]
gi\|221166968, gi... - gi\|221212755\|ref\|ZP_03585731.1\| conserved hypothetical protein TIGR00103 [Burkholderia multivorans C... gi\|221204346, gi... - gi\|221204346\|ref\|ZP_03577363.1\| conserved hypothetical protein TIGR00103 [Burkholderia multivorans C... gi\|221182027, gi... - gi\|221198095\|ref\|ZP_03571141.1\| conserved hypothetical protein TIGR00103 [Burkholderia multivorans C... gi\|84361910 - gi\|84361910\|ref\|ZP_00986549.1\| COG0718: Uncharacterized protein conserved in bacteria [Burkholderia ...	142.0	[0..7]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREKPMFGKG GLGNLMKQAQ QMQEKMQKMQ EEIAQLEVTG ESGAGLVKVT INGAHNCRRV  60
   61 EIDPSLLEDD KEMLEDLVAA AFNDAARRIE ETQKEKMASV SSGMQLPPGF KMPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	1pugA
Description:	Hypothetical upf0133 protein YbaB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits