YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24050495, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24050495, gi|....

Description	E-value	Query Range	Subject Range
gi\|110613913, gi... - gi\|110804365\|ref\|YP_687885.1\| phosphoheptose isomerase [Shigella flexneri 5 str. 8401], gi\|110613913...	212.0	[0..1]	[246..1]
gi\|117622526, gi... - gi\|117622526\|ref\|YP_851439.1\| phosphoheptose isomerase [Escherichia coli APEC O1], gi\|115511650\|gb\|A... gi\|91209310, gi\|... - gi\|91209310\|ref\|YP_539296.1\| phosphoheptose isomerase [Escherichia coli UTI89], gi\|91070884\|gb\|ABE05... gi\|226898970, gi... - gi\|237707760\|ref\|ZP_04538241.1\| phosphoheptose isomerase [Escherichia sp. 3_2_53FAA], gi\|226898970\|g...	211.0	[0..1]	[246..1]
gi\|83570263 - gi\|83570263\|ref\|ZP_00921709.1\| COG0279: Phosphoheptose isomerase [Shigella dysenteriae 1012] gi\|83586303 - gi\|83586303\|ref\|ZP_00924938.1\| COG0279: Phosphoheptose isomerase [Escherichia coli 101-1] gi\|227884757, gi... - gi\|227884757\|ref\|ZP_04002562.1\| phosphoheptose isomerase [Escherichia coli 83972], gi\|227838358\|gb\|E... gi\|1552792 - gi\|1552792\|gb\|AAB08644.1\| hypothetical [Escherichia coli] gi\|75176783 - gi\|75176783\|ref\|ZP_00696899.1\| COG0279: Phosphoheptose isomerase [Shigella boydii BS512] gi\|75237317 - gi\|75237317\|ref\|ZP_00721364.1\| COG0279: Phosphoheptose isomerase [Escherichia coli E110019] gi\|75241703 - gi\|75241703\|ref\|ZP_00725540.1\| COG0279: Phosphoheptose isomerase [Escherichia coli F11] gi\|75258773 - gi\|75258773\|ref\|ZP_00730163.1\| COG0279: Phosphoheptose isomerase [Escherichia coli E22] gi\|75513629 - gi\|75513629\|ref\|ZP_00736020.1\| COG0279: Phosphoheptose isomerase [Escherichia coli 53638] gi\|75189329 - gi\|75189329\|ref\|ZP_00702596.1\| COG0279: Phosphoheptose isomerase [Escherichia coli E24377A] gi\|75194443 - gi\|75194443\|ref\|ZP_00704513.1\| COG0279: Phosphoheptose isomerase [Escherichia coli HS] gi\|75211208 - gi\|75211208\|ref\|ZP_00711315.1\| COG0279: Phosphoheptose isomerase [Escherichia coli B171] gi\|75231176 - gi\|75231176\|ref\|ZP_00717598.1\| COG0279: Phosphoheptose isomerase [Escherichia coli B7A]	171.0	[0..49]	[246..1]
GMHA_HISS2 - Phosphoheptose isomerase OS=Histophilus somni (strain 2336) GN=gmhA PE=3 SV=1 gi\|53692692 - gi\|53692692\|ref\|ZP_00347388.1\| COG0279: Phosphoheptose isomerase [Haemophilus somnus 129PT]	168.0	[0..55]	[246..1]
GMHA_ACTP2 - Phosphoheptose isomerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=gmhA PE=3 SV... GMHA_ACTP7 - Phosphoheptose isomerase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=gmhA PE=3 SV... gi\|32034150 - gi\|32034150\|ref\|ZP_00134382.1\| COG0279: Phosphoheptose isomerase [Actinobacillus pleuropneumoniae se... GMHA_ACTPJ - Phosphoheptose isomerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=gmhA PE=3 SV...	167.0	[0..55]	[246..1]
GMHA_ACTSZ - Phosphoheptose isomerase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=gmhA PE=3 SV=1	167.0	[0..55]	[246..1]
gi\|113461381, gi... - gi\|113461381\|ref\|YP_719450.1\| phosphoheptose isomerase [Haemophilus somnus 129PT], gi\|112823424\|gb\|A...	166.0	[0..58]	[246..2]
GMHA_PASMU - Phosphoheptose isomerase OS=Pasteurella multocida (strain Pm70) GN=gmhA PE=3 SV=1 GMHA_PASMU - Phosphoheptose isomerase OS=Pasteurella multocida GN=gmhA PE=3 SV=1	165.0	[0..55]	[246..1]
GMHA_HAEIN - Phosphoheptose isomerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=gm... GMHA_HAEIN - Phosphoheptose isomerase OS=Haemophilus influenzae GN=gmhA PE=3 SV=1	165.0	[0..55]	[246..1]
GMHA_YERPG - Phosphoheptose isomerase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gmhA PE=3 SV=1 GMHA_YERP3 - Phosphoheptose isomerase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gmhA PE=3... gi\|89105998, gi\|... - gi\|89105998\|ref\|ZP_01178509.1\| COG0279: Phosphoheptose isomerase [Yersinia pestis biovar Orientalis ... GMHA_YERPA - Phosphoheptose isomerase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gmhA PE=3 SV=1 GMHA_YERPN - Phosphoheptose isomerase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gmhA PE=3 SV=1 GMHA_YERPP - Phosphoheptose isomerase OS=Yersinia pestis (strain Pestoides F) GN=gmhA PE=3 SV=1 gi\|166212970, gi... - gi\|166212970\|ref\|ZP_02239005.1\| phosphoheptose isomerase [Yersinia pestis biovar Antiqua str. B42003... gi\|166011055, gi... - gi\|166011055\|ref\|ZP_02231953.1\| phosphoheptose isomerase [Yersinia pestis biovar Antiqua str. E19790... gi\|167421465, gi... - gi\|167421465\|ref\|ZP_02313218.1\| phosphoheptose isomerase [Yersinia pestis biovar Orientalis str. MG0... gi\|229695217, gi... - gi\|229838851\|ref\|ZP_04459010.1\| D-sedoheptulose 7-phosphate isomerase [Yersinia pestis biovar Orient... gi\|167399428, gi... - gi\|167399428\|ref\|ZP_02304952.1\| phosphoheptose isomerase [Yersinia pestis biovar Antiqua str. UG05-0... gi\|229895997, gi... - gi\|229895997\|ref\|ZP_04511167.1\| D-sedoheptulose 7-phosphate isomerase [Yersinia pestis Pestoides A],... gi\|167467191 - gi\|167467191\|ref\|ZP_02331895.1\| phosphoheptose isomerase [Yersinia pestis FV-1] gi\|229899420, gi... - gi\|229899420\|ref\|ZP_04514563.1\| D-sedoheptulose 7-phosphate isomerase [Yersinia pestis biovar Orient... gi\|167057646, gi... - gi\|167423476\|ref\|ZP_02315229.1\| phosphoheptose isomerase [Yersinia pestis biovar Mediaevalis str. K1... gi\|186894252, gi... - gi\|186894252\|ref\|YP_001871364.1\| phosphoheptose isomerase [Yersinia pseudotuberculosis PB1/+], gi\|18... GMHA_YERPY - Phosphoheptose isomerase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gmhA PE=3 SV=... Q66E09\|Q66E09_YERPS - Phosphoheptose isomerase - Yersinia pseudotuberculosis gi\|51588516, gi\|... - gi\|51595234\|ref\|YP_069425.1\| phosphoheptose isomerase [Yersinia pseudotuberculosis IP 32953], gi\|515... gi\|45435396, gi\|... - gi\|45440539\|ref\|NP_992078.1\| phosphoheptose isomerase [Yersinia pestis biovar Microtus str. 91001], ... gi\|22124854, gi\|... - gi\|22124854\|ref\|NP_668277.1\| phosphoheptose isomerase [Yersinia pestis KIM], gi\|21957685\|gb\|AAM84528... gi\|165926659, gi... - gi\|165926659\|ref\|ZP_02222491.1\| phosphoheptose isomerase [Yersinia pestis biovar Orientalis str. F19... gi\|149291327, gi... - gi\|149364914\|ref\|ZP_01886949.1\| D-sedoheptulose 7-phosphate isomerase [Yersinia pestis CA88-4125], g...	164.0	[0..55]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLQYNYNKA HIVAVFIRTS GQKVLVIAPA RTSRFWRYPV HCILSITFML KDILMYQDLI  60
   61 RNELNEAAET LANFLKDDAN IHAIQRAAVL LADSFKAGGK VLSCGNGGSH CDAMHFAEEL 120
  121 TGRYRENRPG YPAIAISDVS HISCVGNDFG FNDIFSRYVE AVGREGDVLL GISTSGNSAN 180
  181 VIKAIAAARE KGMKVITLTG KDGGKMAGTA DIEIRVPHFG YADRIQEIHI KVIHILIQLI 240
  241 EKEMVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.30103
Match:	2i22A
Description:	No description for 2i22A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits