YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347916, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347916, gi|....

Description	E-value	Query Range	Subject Range
gi\|24114756, gi\|... - ref\|NP_710067.1\| putative transposase A [Shigella flexneri 2a str. 301], gi\|24115420\|ref\|NP_709930....	99.0	[0..3]	[93..1]
gi\|251786920, gi... - gi\|251786920\|ref\|YP_003001224.1\| hypothetical protein B21_03480 [Escherichia coli BL21], gi\|24237919... gi\|254163604, gi... - gi\|254163604\|ref\|YP_003046712.1\| predicted IS protein [Escherichia coli B str. REL606], gi\|253975505... gi\|194435926, gi... - gi\|83588478\|ref\|ZP_00927102.1\| COG2963: Transposase and inactivated derivatives [Escherichia coli 10... gi\|253771487, gi... - gi\|254290354\|ref\|YP_003056102.1\| predicted IS protein [Escherichia coli BL21(DE3)], gi\|253979661\|gb\|...	96.0	[0..5]	[89..1]
gi\|37518400 - gi\|37518400\|emb\|CAD58552.1\| hypothetical protein [Yersinia enterocolitica] gi\|124499896, gi... - gi\|124529438\|ref\|ZP_01700442.1\| transposase IS3/IS911 family protein [Escherichia coli B], gi\|124499... gi\|170021397, gi... - gi\|170021397\|ref\|YP_001726351.1\| transposase IS3/IS911 family protein [Escherichia coli ATCC 8739], ...	96.0	[0..5]	[89..1]
gi\|87081710, gi\|... - gi\|94541095\|ref\|YP_588436.1\| predicted IS protein [Escherichia coli K12], gi\|87081710\|gb\|ABD18635.1\|... gi\|89107139, gi\|... - gi\|89107139\|ref\|AP_000919.1\| predicted IS protein [Escherichia coli str. K-12 substr. W3110], gi\|490... gi\|170079890, gi... - gi\|170079890\|ref\|YP_001729210.1\| IS protein [Escherichia coli str. K-12 substr. DH10B], gi\|169887725... YKGN_ECOLI - Putative transposase ykgN - Escherichia coli	96.0	[0..5]	[89..1]
gi\|110615075, gi... - gi\|110805527\|ref\|YP_689047.1\| ISEhe3 orfA [Shigella flexneri 5 str. 8401], gi\|110615075\|gb\|ABF03742....	95.0	[0..5]	[93..1]
gi\|110617666, gi... - gi\|110808118\|ref\|YP_691638.1\| ISEhe3 orfA [Shigella flexneri 5 str. 8401], gi\|110807991\|ref\|YP_69151... gi\|56384143, gi\|... - gi\|56480592\|ref\|NP_710067.2\| hypothetical protein SF4358 [Shigella flexneri 2a str. 301], gi\|5638414... gi\|157065459, gi... - gi\|75198121\|ref\|ZP_00708191.1\| COG2963: Transposase and inactivated derivatives [Escherichia coli HS... gi\|30065575, gi\|... - gi\|30065575\|ref\|NP_839746.1\| ISEhe3 orfA [Shigella flexneri 2a str. 2457T], gi\|30065441\|ref\|NP_83961...	95.0	[0..5]	[93..1]
gi\|12484143 - gi\|12484143\|gb\|AAG53987.1\|AF327445_1 putative transposase A [Pantoea agglomerans]	95.0	[0..3]	[93..1]
gi\|157161432, gi... - gi\|75196019\|ref\|ZP_00706089.1\| COG2963: Transposase and inactivated derivatives [Escherichia coli HS...	94.0	[0..5]	[93..1]
gi\|90332927, gi\|... - gi\|90415604\|ref\|ZP_01223538.1\| ISxac3 transposase [marine gamma proteobacterium HTCC2207], gi\|903329... gi\|90415604\|ref\|... - ISxac3 transposase [marine gamma proteobacterium HTCC2207]	94.0	[0..5]	[96..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKKSHKSY PQAFKDEAVL MVLEQGYSVA DAAKSLGVST SLLYNWKEKH EALQQGITLE  60
   61 ESERDELKRL RRENKELRME KEILKKASAF FAREMK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.09691
Match:	2jn6A
Description:	No description for 2jn6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits